Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   At1D1108_RS00765 Genome accession   NZ_CP032921
Coordinates   157104..157469 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain 1D1108     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 152104..162469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At1D1108_RS00750 (At1D1108_01400) - 154319..154696 (-) 378 WP_121556387.1 hypothetical protein -
  At1D1108_RS00755 (At1D1108_01410) - 155213..156808 (+) 1596 WP_233283633.1 globin-coupled sensor protein -
  At1D1108_RS00760 (At1D1108_01420) - 156808..157107 (+) 300 WP_013635450.1 STAS domain-containing protein -
  At1D1108_RS00765 (At1D1108_01430) scnR 157104..157469 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  At1D1108_RS00770 (At1D1108_01440) - 157486..159753 (+) 2268 WP_025592437.1 chemotaxis protein CheA -
  At1D1108_RS00775 (At1D1108_01450) cheR 159767..160675 (+) 909 WP_019564320.1 protein-glutamate O-methyltransferase CheR -
  At1D1108_RS00780 (At1D1108_01460) cheB 160672..161727 (+) 1056 WP_019564319.1 protein-glutamate O-methylesterase CheB -
  At1D1108_RS00785 (At1D1108_01470) cheY2 161727..162116 (+) 390 WP_003515008.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=281175 At1D1108_RS00765 WP_003493773.1 157104..157469(+) (scnR) [Agrobacterium tumefaciens strain 1D1108]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=281175 At1D1108_RS00765 WP_003493773.1 157104..157469(+) (scnR) [Agrobacterium tumefaciens strain 1D1108]
GTGAAGAAAAAAGTTCTTACCGTGGATGATTCCAGAACGATCAGGAACATGCTCCTGGTCACGCTCAACAATGCCGGTTT
CGAGACAATTCAGGCCGAAGACGGCATTGAGGGTCTTGAAGTGCTGGAGCAGAGCAACCCCGACGTCATCGTGACCGATA
TCAACATGCCCCGTCTTGATGGTTTCGGCTTCATCGAGGGTGTGCGTCGCAATGAGAAGTACCGGGCCATACCGATCCTC
GTTCTGACGACCGAAAGCGACGCAGAGAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACCGGCTGGATCGTCAAGCCGTT
CGATCCTGCGAAGCTCATCGATGCCATTGAACGCGTAACTGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364

Multiple sequence alignment