Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   At15955_RS12430 Genome accession   NZ_CP032917
Coordinates   2516593..2518401 (+) Length   602 a.a.
NCBI ID   WP_038489290.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 15955     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2511593..2523401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At15955_RS12430 (At15955_24020) recQ 2516593..2518401 (+) 1809 WP_038489290.1 DNA helicase RecQ Machinery gene
  At15955_RS12435 (At15955_24030) - 2518456..2519688 (-) 1233 WP_038489293.1 ROK family transcriptional regulator -
  At15955_RS12440 (At15955_24040) - 2519955..2520977 (+) 1023 WP_003514241.1 sugar ABC transporter substrate-binding protein -
  At15955_RS12445 (At15955_24050) - 2521201..2522283 (+) 1083 WP_038489298.1 ABC transporter permease -
  At15955_RS12450 (At15955_24060) - 2522283..2523065 (+) 783 WP_013635211.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67027.75 Da        Isoelectric Point: 6.5089

>NTDB_id=281168 At15955_RS12430 WP_038489290.1 2516593..2518401(+) (recQ) [Agrobacterium tumefaciens strain 15955]
MTTDPLQILKTVYGYDTFRGQQAEIIRHVMAGNNAFVLMPTGGGKSLCYQIPALARKGMGLVVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRILWQDMRAGKVDILYAAPETLLKPDVLDALQPISLSLIAIDEAHCLSQWGHDFRPPYRQLDTL
IERFPDTPRMALTATADEPTRAEILGHLGINGSDAFIAGFDRPNIRYAIMEKDNPRTQLKRFLTGREDESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREANQTHFQHGEAVIMVATVAFGMGIDKPDVRFVVHIDLPSSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAGDQRKNMERRKLDALLGLAETAGCRRRVLLSYFGDHCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGMEDERISNFGHDRITTYGIGKEHDNRTWRAILRQMVALRLIEVDLAG
HGGLSISEEGRRFLREKPSLMLRIPSAPRSARQQTNRKPTAIVLPDADRSLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELAASRPASVGEMAQIPGVGDTKLERYGPAFLAAIMEHAASE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=281168 At15955_RS12430 WP_038489290.1 2516593..2518401(+) (recQ) [Agrobacterium tumefaciens strain 15955]
GTGACCACCGATCCCTTGCAGATTCTCAAGACCGTGTATGGCTACGATACGTTTCGTGGACAGCAGGCCGAAATCATCCG
GCATGTGATGGCAGGCAACAATGCATTTGTATTGATGCCAACAGGGGGCGGGAAGTCGCTTTGTTACCAGATTCCGGCGC
TCGCCCGTAAGGGAATGGGGCTGGTTGTTTCGCCCCTGATCGCGCTGATGGTTGATCAGGTCGCCGCCTTGCGTCAGGCA
GGTGTGCGGGCAGAAGCTCTCAACTCCGATCTTTCCCCAGAAGAGCGGCGGATACTCTGGCAGGATATGCGGGCTGGCAA
GGTCGATATTCTCTATGCCGCGCCGGAGACCCTTCTCAAGCCGGATGTTCTGGATGCGCTTCAACCTATCAGCCTGTCGC
TGATCGCCATCGACGAAGCTCATTGCCTGTCGCAGTGGGGGCACGATTTCCGTCCCCCTTACCGCCAGCTAGACACGTTG
ATCGAGCGCTTTCCGGATACGCCACGCATGGCGCTCACGGCGACTGCGGACGAGCCAACCCGCGCCGAAATTCTGGGTCA
TCTCGGGATCAACGGAAGCGACGCCTTCATAGCCGGATTCGATCGGCCAAATATCCGCTATGCGATCATGGAAAAGGATA
ATCCACGTACGCAGCTGAAGCGCTTCCTGACGGGTCGCGAGGACGAAAGCGGCATCGTCTATTGCCTTTCCAAACGCAAG
GTAGATGAGACGGCGGCCTGGCTGCGTGAGGAGGGGCGCGATGCGCTGCCCTATCACGCCGGCATGGACAAGGCCGCCCG
CGAGGCGAACCAGACCCACTTCCAGCATGGTGAAGCTGTCATCATGGTTGCAACCGTGGCTTTCGGTATGGGCATCGACA
AACCGGATGTGCGCTTCGTTGTGCATATCGATCTGCCCAGCAGCATCGAAGCCTATTATCAGGAAACCGGCCGTGCCGGC
CGTGACGGTCTGCCGTCCGACGTGCTTATGCTTTACGGTTATGAAGACATCGCATTGCGCAACCGCTTTATCGAAGAGTC
GGATGCGGGCGACCAGCGCAAGAACATGGAGCGCCGGAAGCTCGATGCGTTGCTTGGCCTCGCGGAAACAGCCGGTTGCC
GTCGGCGGGTGCTTTTGTCTTATTTCGGCGACCATTGTGAGCCCTGCGGCAATTGCGACACCTGTGCGGAGCCGCCGGAC
CTGTTTGATGGTGCCATTGCCGCGCAGAAGTTGCTGTCCTGCATTTACCGCACGGGAGAACGTTTCGGCCAGGCCTATGT
CATCCGCGTATTGCTGGGCATGGAAGATGAACGGATATCGAACTTTGGTCACGATCGGATCACGACCTACGGCATCGGCA
AAGAGCACGACAATCGCACCTGGCGGGCCATCCTGCGCCAGATGGTTGCGCTGCGCCTGATCGAGGTTGATCTGGCCGGT
CACGGGGGATTGTCCATTTCCGAAGAAGGGAGGCGGTTCCTGCGCGAAAAGCCGTCCCTGATGTTGAGGATACCGTCCGC
TCCCCGTTCGGCGCGACAACAGACGAATCGCAAGCCCACCGCCATTGTTCTACCGGATGCCGATCGTAGTCTCTTTGAGG
CGCTGCGTGCGAAGCGCATGGAAATTGCCCGCGCACAGAACGTTCCGCCCTATGTGATTTTTCACGACAAGACACTCATT
GAGCTTGCGGCATCAAGACCGGCCTCTGTGGGGGAAATGGCGCAGATACCTGGAGTGGGAGACACAAAGCTGGAACGATA
CGGCCCTGCTTTTCTGGCGGCGATCATGGAACATGCCGCCAGCGAGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(220-322)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

HRDC domain (HRDC)

(530-595)

DEAD/DEAH box helicase (DEAD)

(22-177)

RQC domain (RQC)

(398-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.087

99.003

0.377