Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C1N55_RS19755 Genome accession   NZ_CP028083
Coordinates   4008265..4009641 (-) Length   458 a.a.
NCBI ID   WP_137730363.1    Uniprot ID   A0A4V1FFW5
Organism   Lysinibacillus sp. SGAir0095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4003265..4014641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N55_RS19735 (C1N55_19775) gltX 4003994..4005454 (-) 1461 WP_137730360.1 glutamate--tRNA ligase -
  C1N55_RS19740 (C1N55_19780) ispF 4005721..4006197 (-) 477 WP_137730361.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  C1N55_RS19745 (C1N55_19785) ispD 4006214..4006897 (-) 684 WP_137730707.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  C1N55_RS19750 (C1N55_19790) - 4006954..4008048 (-) 1095 WP_137730362.1 PIN/TRAM domain-containing protein -
  C1N55_RS19755 (C1N55_19795) radA 4008265..4009641 (-) 1377 WP_137730363.1 DNA repair protein RadA Machinery gene
  C1N55_RS19760 (C1N55_19800) - 4009828..4012272 (-) 2445 WP_137730364.1 ATP-dependent Clp protease ATP-binding subunit -
  C1N55_RS19765 (C1N55_19805) - 4012262..4013362 (-) 1101 WP_137730365.1 protein arginine kinase -
  C1N55_RS19770 (C1N55_19810) - 4013359..4013913 (-) 555 WP_137730366.1 UvrB/UvrC motif-containing protein -
  C1N55_RS19775 (C1N55_19815) - 4013979..4014443 (-) 465 WP_137730367.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50230.73 Da        Isoelectric Point: 6.8888

>NTDB_id=281167 C1N55_RS19755 WP_137730363.1 4008265..4009641(-) (radA) [Lysinibacillus sp. SGAir0095]
MAKKKSKFCCNSCGYESPKWMGRCPGCGGWNTMVEEVEVVSKGPRGAFQHSNSISQKATPIINIETSDEPRIPTEMEELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLMQVSALLSNKAHRVLYISGEESMRQTKLRASRLGVQSPELYIYSETNLELINQ
TIEEVGPKFVIIDSIQTIHHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRLLEHMVDTVLYFE
GERHHTYRILRSVKNRFGSTNEIAIFEMVQAGLKEVSNPSELFLEERSYDAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMSTGVDQNRVQLLMAVLEKRMGLLLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVKSTDCFIGEVGLTG
EVRRVSRIEQRVQEAARLGFKRAFIPASNQGGWDYPSGIQVVGIETINEALRACFNDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=281167 C1N55_RS19755 WP_137730363.1 4008265..4009641(-) (radA) [Lysinibacillus sp. SGAir0095]
ATGGCAAAAAAGAAATCAAAGTTTTGTTGTAATTCATGTGGCTATGAATCTCCAAAATGGATGGGGCGCTGCCCGGGCTG
TGGTGGCTGGAATACGATGGTAGAAGAAGTGGAAGTCGTATCAAAAGGTCCACGTGGTGCTTTTCAGCATTCCAATTCTA
TTTCACAAAAAGCTACGCCTATCATAAATATTGAAACCTCGGATGAACCTCGAATTCCTACAGAAATGGAAGAGTTGAAT
CGTGTTTTGGGTGGGGGCATTGTCCCAGGCTCCCTAGTATTAATTGGTGGAGACCCTGGTATCGGTAAATCGACTTTGCT
TATGCAAGTATCTGCCCTTTTATCCAACAAAGCACATCGCGTTTTGTACATATCCGGAGAGGAATCAATGCGTCAAACAA
AGCTTCGTGCATCCAGGTTGGGTGTGCAATCACCAGAACTCTATATCTACTCCGAGACAAATCTAGAGTTGATTAACCAA
ACGATAGAAGAAGTCGGGCCGAAGTTTGTCATAATTGACTCAATACAAACCATTCACCACCCGGAAGTGACAAGTGCCCC
TGGTAGTGTTTCTCAAGTTCGTGAATGTACCGCAGAGTTAATGCGGATTGCCAAAACAAAGGGGATTGCTATTTTCTTAG
TAGGCCACGTAACAAAAGAGGGACAAATCGCTGGACCTCGTTTACTAGAACATATGGTAGATACTGTTCTATATTTCGAA
GGGGAACGCCATCATACGTATCGAATTTTACGAAGTGTTAAAAATCGTTTTGGTTCTACCAATGAAATTGCTATTTTCGA
AATGGTGCAAGCTGGCTTAAAGGAAGTATCCAACCCTTCAGAACTGTTTTTAGAGGAGCGTTCCTATGATGCGGCAGGTT
CCACAATTGTTGCCTCTATGGAAGGGACAAGGCCGATATTAGTTGAGATTCAATCATTGGTCACGCCAACGAGCTTTAAT
TATCCGAAACGTATGTCTACTGGGGTAGACCAAAATAGGGTGCAGCTGTTAATGGCTGTTTTGGAAAAACGAATGGGGTT
ACTGCTGCAAGCCCAGGATGCTTATATCAAAGTGGCTGGTGGCGTAAAGCTTGATGAGCCTGCCATCGACCTAGCGGTTT
TAACTTCCATTGTATCGAGCTTTAAAGATCAGGCAGTAAAATCGACGGACTGCTTTATTGGAGAAGTGGGATTAACGGGA
GAGGTACGCCGTGTATCGAGAATAGAGCAACGAGTTCAAGAGGCTGCGAGACTAGGCTTTAAGCGGGCATTTATCCCTGC
TTCCAACCAAGGAGGATGGGATTATCCTAGTGGTATTCAAGTAGTTGGCATCGAAACAATAAATGAAGCATTAAGAGCTT
GTTTTAACGATTTATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(63-221)

Subunit ChlI of Mg-chelatase (ChlI)

(358-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V1FFW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.397

100

0.714
  radA Streptococcus pneumoniae Rx1

62.5

99.563

0.622
  radA Streptococcus pneumoniae D39

62.5

99.563

0.622
  radA Streptococcus pneumoniae R6

62.5

99.563

0.622
  radA Streptococcus pneumoniae TIGR4

62.5

99.563

0.622
  radA Streptococcus mitis NCTC 12261

62.5

99.563

0.622
  radA Streptococcus mitis SK321

62.5

99.563

0.622

Multiple sequence alignment