Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C1N55_RS18640 Genome accession   NZ_CP028083
Coordinates   3797653..3798609 (-) Length   318 a.a.
NCBI ID   WP_137730181.1    Uniprot ID   -
Organism   Lysinibacillus sp. SGAir0095     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3792653..3803609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N55_RS18615 (C1N55_18655) - 3793496..3794113 (-) 618 WP_137730176.1 phosphatase PAP2 family protein -
  C1N55_RS18620 (C1N55_18660) - 3794326..3794658 (-) 333 WP_137730177.1 antibiotic biosynthesis monooxygenase -
  C1N55_RS18625 (C1N55_18665) - 3794723..3795763 (-) 1041 WP_137730178.1 siderophore ABC transporter substrate-binding protein -
  C1N55_RS18630 (C1N55_18670) - 3795946..3796713 (-) 768 WP_137730179.1 ABC transporter ATP-binding protein -
  C1N55_RS18635 (C1N55_18675) - 3796710..3797666 (-) 957 WP_137730180.1 iron chelate uptake ABC transporter family permease subunit -
  C1N55_RS18640 (C1N55_18680) ceuB 3797653..3798609 (-) 957 WP_137730181.1 ABC transporter permease Machinery gene
  C1N55_RS18645 (C1N55_18685) - 3798807..3799664 (-) 858 WP_137730182.1 DUF6612 family protein -
  C1N55_RS18650 (C1N55_18690) - 3799782..3801269 (-) 1488 WP_137730183.1 peptide MFS transporter -
  C1N55_RS18655 (C1N55_18695) hflX 3801538..3802824 (-) 1287 WP_205758490.1 GTPase HflX -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34980.35 Da        Isoelectric Point: 9.8444

>NTDB_id=281162 C1N55_RS18640 WP_137730181.1 3797653..3798609(-) (ceuB) [Lysinibacillus sp. SGAir0095]
MRLWMLIIAAIILSFISLFIGAIDIKPSDLLDWNSRELQIFLISRVPRLIAIILAGVGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALIGTLVFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFFAYEADLL
QNISAWLMGSFTLIIAGRYELLYLSVPAVILAYLYANKFTVAGMGEDFAKNLGLSYKFVLNIGLILVAIIATTVVLTVGV
IPFLGLIVPNIVSLYMGDNLRKTIPHTAVLGVVFLLICDIIGRVIVYPFEIPVNVTVAVIGSAIFLIMLFRGRAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=281162 C1N55_RS18640 WP_137730181.1 3797653..3798609(-) (ceuB) [Lysinibacillus sp. SGAir0095]
ATGAGACTGTGGATGTTAATTATCGCAGCGATCATCCTATCGTTTATTTCGCTCTTTATTGGCGCGATAGATATAAAACC
AAGTGATTTACTTGATTGGAATTCAAGAGAATTGCAAATTTTCTTAATCAGTCGTGTACCGCGCCTAATTGCGATTATTC
TAGCGGGTGTAGGGATGAGTATTGCGGGCTTAATCATGCAAAGCTTAAGTCGAAATAAATTTGTTTCCCCAACAACAGCA
GGAACTTTAGATGCTGCAAAGTTAGGGATTCTCATTTCGATGTTGTTCTTTACAAATGTAACGTATACACAGCAAGTTAT
TTTTAGTTTTGCGTTTGCATTAATTGGAACTTTGGTTTTCATGCAGATTCTAGATCGTATCAAATTTAAAGATGTTATTT
TCGTACCGTTAATCGGGATAATGTATGGAAACATTTTATCCTCCATTACGACTTTTTTTGCGTACGAAGCAGATTTACTT
CAAAATATTAGCGCGTGGCTAATGGGAAGCTTTACATTAATCATTGCCGGACGATATGAACTGCTTTACCTAAGTGTACC
AGCTGTTATTTTAGCCTATCTATATGCTAATAAATTTACAGTTGCTGGTATGGGCGAGGATTTTGCAAAAAACTTGGGAT
TGAGCTATAAGTTTGTTCTTAATATCGGACTAATTCTTGTGGCAATTATAGCGACAACCGTTGTACTGACAGTGGGAGTC
ATACCATTTTTAGGGTTAATCGTACCGAACATTGTTTCACTATATATGGGAGATAACTTGCGAAAAACAATTCCACATAC
TGCTGTATTGGGAGTCGTTTTCCTATTAATATGTGACATTATTGGTCGAGTAATTGTTTATCCATTTGAAATACCTGTTA
ATGTTACCGTGGCAGTTATTGGCAGTGCGATCTTCTTGATAATGTTGTTTAGGGGGAGAGCATATGCGAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.43

99.371

0.541

Multiple sequence alignment