Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   At15955_RS05035 Genome accession   NZ_CP032917
Coordinates   1009017..1009739 (-) Length   240 a.a.
NCBI ID   WP_003512859.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 15955     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1004017..1014739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At15955_RS05025 (At15955_09840) - 1005443..1007878 (+) 2436 WP_038490873.1 ComEC/Rec2 family competence protein -
  At15955_RS05030 (At15955_09850) - 1007895..1008578 (-) 684 WP_038490877.1 glutathione S-transferase family protein -
  At15955_RS05035 (At15955_09860) dinR/lexA 1009017..1009739 (-) 723 WP_003512859.1 transcriptional repressor LexA Regulator
  At15955_RS05040 (At15955_09870) - 1009951..1010832 (+) 882 WP_003512866.1 VOC family protein -
  At15955_RS05045 (At15955_09880) kdsA 1010832..1011677 (+) 846 WP_019565541.1 3-deoxy-8-phosphooctulonate synthase -
  At15955_RS05050 (At15955_09890) eno 1011825..1013099 (+) 1275 WP_003512870.1 phosphopyruvate hydratase -
  At15955_RS05055 (At15955_09900) - 1013436..1013753 (+) 318 WP_003512872.1 FtsB family cell division protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25998.93 Da        Isoelectric Point: 9.3311

>NTDB_id=281149 At15955_RS05035 WP_003512859.1 1009017..1009739(-) (dinR/lexA) [Agrobacterium tumefaciens strain 15955]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQ
RGFSPSVIEGSLGKPKTPEPAPAPKTPANDLGGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGTGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=281149 At15955_RS05035 WP_003512859.1 1009017..1009739(-) (dinR/lexA) [Agrobacterium tumefaciens strain 15955]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAACGAATGAAAGAGTCCGGCGTGCCGCCCTCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCTTCGAAATCCGGCATCCACCGCCTGATAACCGCTCTCGAAGAGCGAGGATTCA
TTCGTCGGCTACCGAATAGAGCTCGGGCGCTGGAAGTCATCAAGCTGCCCGAGGCTTATACGCCGGGTGCAAGGCCGCAG
CGCGGCTTTTCGCCAAGCGTTATCGAAGGCAGCCTTGGCAAGCCCAAAACGCCGGAACCGGCCCCTGCCCCCAAGACGCC
GGCCAATGATCTGGGCGGCGCTGTCACCGTGCCGGTCATGGGCCGCATCGCTGCGGGCGTACCGATTTCCGCCATCCAGA
ACAACACCCATGATGTGGCCGTGCCAGTAGACATGCTTGGCACGGGCGAACATTACGCTCTTGAGGTCAAGGGTGATTCG
ATGATCGAGGCCGGCATTTTCGACGGCGACACAGTCATCATCCGCAACGGCAACACCGCCAATCCCGGGGATATCGTTGT
GGCTCTGGTGGATGACGAGGAAGCCACGCTGAAGCGCTTCCGCCGCAAGGGTGCCTCCATTGCGCTCGAGGCGGCAAACC
CAGCCTATGAGACCCGTATCTTCGGGCCCGACCGGGTTAAAATTCAGGGCAAGCTGGTGGGGCTGATCCGCCGCTACCAT
TGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(118-233)

LexA DNA binding domain (LexA_DNA_bind)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363

Multiple sequence alignment