Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C1N55_RS11755 Genome accession   NZ_CP028083
Coordinates   2394637..2396340 (-) Length   567 a.a.
NCBI ID   WP_137729005.1    Uniprot ID   A0A4P8S8E9
Organism   Lysinibacillus sp. SGAir0095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2389637..2401340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N55_RS11735 (C1N55_11760) - 2390715..2391110 (-) 396 WP_137729001.1 gamma-glutamylcyclotransferase -
  C1N55_RS11740 (C1N55_11765) - 2391465..2392178 (-) 714 WP_137729002.1 serine protease -
  C1N55_RS11745 (C1N55_11770) spo0A 2392427..2393218 (-) 792 WP_137729003.1 sporulation transcription factor Spo0A -
  C1N55_RS11750 (C1N55_11775) - 2393513..2394463 (-) 951 WP_137729004.1 SpoIVB peptidase S55 domain-containing protein -
  C1N55_RS11755 (C1N55_11780) recN 2394637..2396340 (-) 1704 WP_137729005.1 DNA repair protein RecN Machinery gene
  C1N55_RS11760 (C1N55_11785) ahrC 2396445..2396894 (-) 450 WP_137729006.1 transcriptional regulator AhrC/ArgR -
  C1N55_RS11765 (C1N55_11790) - 2396998..2397816 (-) 819 WP_137729007.1 TlyA family RNA methyltransferase -
  C1N55_RS11770 (C1N55_11795) dxs 2397813..2399717 (-) 1905 WP_137729008.1 1-deoxy-D-xylulose-5-phosphate synthase -
  C1N55_RS11775 (C1N55_11800) - 2399925..2400809 (-) 885 WP_137729009.1 polyprenyl synthetase family protein -
  C1N55_RS11780 (C1N55_11805) xseB 2400812..2401042 (-) 231 WP_255502407.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64705.37 Da        Isoelectric Point: 4.7667

>NTDB_id=281149 C1N55_RS11755 WP_137729005.1 2394637..2396340(-) (recN) [Lysinibacillus sp. SGAir0095]
MLKELSIRNFAIIDELTVDFSEGLTVLTGETGAGKSIIIDAVHLLAGGRASLEFIRHGAKKAELTGLFMILNESHPIYEK
LQEYGIESEEGMIILRRDINENGKSVCRVNGKLVTLSILREIGSTLIDIHGQHESQELMDEKRHIDLLDHFAHHELTSVK
EKYTEKYQAYREFKREIASINLDEQRLAQRIDLYQFQINELEDANLKLGEEEQLVEERRRLSNFHKIFERANIAYESISG
ELKGLDNIGDAMNALEDIVEIDEQFNEASETVSSAFYALQDAAYQIKNVLDELEFDPERLNEVEHRLAQYQTMKRKYGNT
VEDILTYFEKIQDELIQLQNRDETIQNYEKKLSDMEKELEQLALSLTKIRKQSALKLSEAIMEQLRDLHMEKAKFIVNFE
TLHSFDSNGKDYVSFYISTNVGEPPKSLPRIASGGELSRIMLALKTMFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISISSQVLCISHLPQVAAMADQHYLIRKQVEQNRTYTTVSNIDIQNRVEEISRMMSGSEITDLTLQHASELLKLADLRKQ
EMKNLFG

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=281149 C1N55_RS11755 WP_137729005.1 2394637..2396340(-) (recN) [Lysinibacillus sp. SGAir0095]
TTGTTAAAAGAACTTAGTATTCGTAATTTCGCAATCATTGATGAATTAACTGTGGACTTTTCAGAAGGATTAACTGTCCT
AACCGGTGAGACAGGTGCAGGAAAATCCATTATAATTGATGCCGTTCATTTACTCGCTGGTGGACGAGCTTCTCTTGAAT
TTATAAGACATGGTGCTAAAAAAGCCGAGTTAACAGGATTGTTTATGATTTTAAACGAGAGTCATCCAATCTATGAAAAA
CTTCAGGAATATGGGATTGAAAGTGAAGAAGGAATGATTATTCTTCGGAGAGATATTAACGAAAATGGAAAAAGTGTCTG
TCGTGTGAATGGCAAGTTAGTAACGCTTTCCATACTCAGGGAAATAGGCTCGACATTAATCGATATTCATGGTCAGCATG
AAAGTCAAGAGTTAATGGATGAAAAAAGACATATCGATTTACTTGATCATTTTGCCCATCATGAACTGACTTCAGTCAAA
GAAAAATATACAGAAAAATATCAGGCATATAGAGAATTTAAACGTGAAATTGCCTCAATCAACCTAGATGAACAACGACT
TGCACAACGTATTGATTTATATCAATTCCAAATTAATGAATTGGAAGATGCGAATTTGAAATTGGGCGAAGAAGAGCAGC
TAGTTGAAGAACGTAGACGATTGTCTAATTTTCATAAAATCTTTGAACGGGCTAATATTGCCTACGAATCCATTTCAGGT
GAATTAAAGGGCCTTGATAATATAGGTGATGCAATGAATGCCTTAGAGGATATCGTCGAGATAGATGAACAATTTAATGA
AGCCTCTGAAACAGTTAGTTCAGCCTTTTATGCATTACAGGATGCAGCCTACCAAATCAAAAATGTACTGGATGAGCTGG
AGTTTGATCCGGAGAGATTAAATGAAGTCGAACATCGATTGGCACAATACCAAACAATGAAAAGGAAGTATGGAAATACT
GTCGAGGATATTTTAACATATTTTGAAAAAATTCAGGATGAATTAATTCAATTGCAAAATCGCGACGAAACCATTCAAAA
TTACGAGAAAAAATTAAGTGACATGGAGAAAGAACTAGAACAACTAGCGCTTTCATTAACGAAAATTCGAAAGCAAAGCG
CATTAAAATTAAGTGAAGCCATCATGGAGCAATTGCGTGATTTACATATGGAAAAAGCGAAATTTATTGTTAATTTTGAA
ACCTTACATAGTTTTGATTCCAATGGGAAAGACTATGTATCATTCTATATATCAACCAATGTTGGTGAGCCACCTAAATC
TTTACCAAGAATTGCATCAGGTGGAGAGTTATCTCGAATAATGTTAGCACTTAAGACGATGTTTTCTTCATCTAATGGCA
TTACATCTATTATTTTTGATGAAGTGGATACTGGTGTTAGCGGCCGAGTTGCACAAGCGATTGCTGAAAAAATTGCAGCA
ATATCCATTTCCTCACAAGTACTTTGTATTTCTCATTTACCACAAGTTGCGGCAATGGCAGATCAGCATTATTTAATTCG
TAAGCAGGTGGAACAAAATAGAACATATACAACGGTTTCTAATATCGATATCCAAAATCGGGTAGAAGAAATCAGTCGTA
TGATGAGTGGTTCTGAAATAACTGACCTCACTTTACAACATGCTTCGGAACTTTTGAAACTTGCCGACTTACGAAAACAG
GAAATGAAAAACTTGTTTGGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P8S8E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.765

100

0.541

Multiple sequence alignment