Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4G81_RS06480 Genome accession   NZ_CP032913
Coordinates   1355153..1356202 (+) Length   349 a.a.
NCBI ID   WP_139524764.1    Uniprot ID   -
Organism   Helicobacter pylori strain 5-A-EK1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1350153..1361202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4G81_RS06460 - 1350220..1350963 (+) 744 WP_078215929.1 carbonic anhydrase -
  D4G81_RS06465 - 1351199..1352323 (-) 1125 WP_139524761.1 DUF874 family protein -
  D4G81_RS06470 asd 1352736..1353776 (-) 1041 WP_139524762.1 aspartate-semialdehyde dehydrogenase -
  D4G81_RS06475 hisS 1353763..1355091 (-) 1329 WP_139524763.1 histidine--tRNA ligase -
  D4G81_RS06480 waaF 1355153..1356202 (+) 1050 WP_139524764.1 lipopolysaccharide heptosyltransferase II Regulator
  D4G81_RS06485 - 1356349..1356573 (-) 225 WP_000744185.1 hypothetical protein -
  D4G81_RS06495 - 1356791..1357780 (+) 990 Protein_1234 aldo/keto reductase -
  D4G81_RS06500 fusA 1358323..1360401 (-) 2079 WP_139524765.1 elongation factor G -
  D4G81_RS06505 rpsG 1360413..1360880 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39369.86 Da        Isoelectric Point: 9.0947

>NTDB_id=281133 D4G81_RS06480 WP_139524764.1 1355153..1356202(+) (waaF) [Helicobacter pylori strain 5-A-EK1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLSFN
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHAAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEEG

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=281133 D4G81_RS06480 WP_139524764.1 1355153..1356202(+) (waaF) [Helicobacter pylori strain 5-A-EK1]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTAATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCCCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTACTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTGCGGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATCATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGCGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTGCACCTTGTAAAAAGCGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AGAGGGTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.931

99.713

0.378