Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D4G81_RS04630 Genome accession   NZ_CP032913
Coordinates   970711..972231 (-) Length   506 a.a.
NCBI ID   WP_139524381.1    Uniprot ID   -
Organism   Helicobacter pylori strain 5-A-EK1     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 965711..977231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4G81_RS04620 - 967206..968585 (-) 1380 WP_139524379.1 restriction endonuclease subunit S -
  D4G81_RS04625 - 968626..970686 (-) 2061 WP_139524380.1 heavy metal translocating P-type ATPase -
  D4G81_RS04630 comM 970711..972231 (-) 1521 WP_139524381.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D4G81_RS04635 def 972237..972761 (-) 525 WP_139524382.1 peptide deformylase -
  D4G81_RS04640 clpP 972766..973353 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D4G81_RS04645 tig 973374..974729 (-) 1356 WP_139524383.1 trigger factor -
  D4G81_RS04650 - 974841..975677 (-) 837 WP_139524384.1 outer membrane protein -
  D4G81_RS04655 hpaA 975706..976488 (-) 783 WP_000646641.1 flagellar sheath lipoprotein HpaA -
  D4G81_RS04660 moaC 976601..977077 (-) 477 WP_001131556.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57184.28 Da        Isoelectric Point: 8.6886

>NTDB_id=281126 D4G81_RS04630 WP_139524381.1 970711..972231(-) (comM) [Helicobacter pylori strain 5-A-EK1]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSTFNGKLNEEQIERFCPLSAEAKKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=281126 D4G81_RS04630 WP_139524381.1 970711..972231(-) (comM) [Helicobacter pylori strain 5-A-EK1]
ATGATCAACACGATATTTTGTGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAATTCTATCCAAGAAGCCAAGCAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCTCCCTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAATTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAATTAGG
ACTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCCAAAA
TCATTGCGCCTAAGGCGAATGAGGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTACAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAATTTGATTTTAGAGGGAAGCCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTCA
AAGAGCCAAAACCTGGCGAAATCGCTCTAGCGCATAACGGCATGCTCTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCAAGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCAACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCACTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCCTTAAGCGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTCTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.628

100

0.976
  comM Acinetobacter baylyi ADP1

36.399

100

0.368