Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   C1N69_RS20210 Genome accession   NZ_CP027986
Coordinates   4167826..4169259 (+) Length   477 a.a.
NCBI ID   WP_155031789.1    Uniprot ID   -
Organism   Enterobacter sichuanensis strain SGAir0282     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4162826..4174259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N69_RS20180 (C1N69_20405) - 4163393..4164370 (+) 978 WP_045284743.1 calcium/sodium antiporter -
  C1N69_RS20185 (C1N69_20410) kdsD 4164384..4165370 (+) 987 WP_059385406.1 arabinose-5-phosphate isomerase KdsD -
  C1N69_RS20190 (C1N69_20415) kdsC 4165385..4165951 (+) 567 WP_059385405.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  C1N69_RS20195 (C1N69_20420) lptC 4165948..4166523 (+) 576 WP_047959546.1 LPS export ABC transporter periplasmic protein LptC -
  C1N69_RS20200 (C1N69_20425) lptA 4166492..4167046 (+) 555 WP_025756693.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  C1N69_RS20205 (C1N69_20430) lptB 4167053..4167778 (+) 726 WP_025756692.1 LPS export ABC transporter ATP-binding protein -
  C1N69_RS20210 (C1N69_20435) rpoN/rpoN1 4167826..4169259 (+) 1434 WP_155031789.1 RNA polymerase factor sigma-54 Machinery gene
  C1N69_RS20215 (C1N69_20440) hpf 4169282..4169569 (+) 288 WP_013098943.1 ribosome hibernation promoting factor -
  C1N69_RS20220 (C1N69_20445) ptsN 4169652..4170143 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  C1N69_RS20225 (C1N69_20450) rapZ 4170189..4171043 (+) 855 WP_014885397.1 RNase adapter RapZ -
  C1N69_RS20230 (C1N69_20455) npr 4171040..4171312 (+) 273 WP_025756690.1 PTS phosphocarrier protein NPr -
  C1N69_RS20235 (C1N69_20460) mtgA 4171352..4172077 (-) 726 WP_095441913.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  C1N69_RS20240 (C1N69_20465) elbB 4172074..4172727 (-) 654 WP_025756688.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54222.01 Da        Isoelectric Point: 4.3105

>NTDB_id=281125 C1N69_RS20210 WP_155031789.1 4167826..4169259(+) (rpoN/rpoN1) [Enterobacter sichuanensis strain SGAir0282]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEVEAVLKRIQRFDPVGVAARDLRDCLLIQLSQFSKETPWLDEARLIISDYLDLLANHDFRTLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=281125 C1N69_RS20210 WP_155031789.1 4167826..4169259(+) (rpoN/rpoN1) [Enterobacter sichuanensis strain SGAir0282]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCAATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAACTCCAGCAGGCGCTGGACAGTAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACCCAGCAATCGCAGGATACAGAAGCGCTCGACACCGCGGATGCACTCGAACAAAAAGAGATGCCGGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAGATCTACACCGCCGGAACCCCATCCGGAACGCGTGCGGACTACCAGGACGA
TGAGCTACCGGTCTATCAGGGAGAAACCACTCAGTCGCTTCAGGATTACCTGATGTGGCAGGTGGAACTGACCCCCTTCT
CCGACACCGATCGTGCGATTGCCACATCCATTGTCGATGCCGTTGATGACACCGGCTATTTAACCGTCACGCTGGACGAC
ATCCTCGAAAGCATGGGCGACGAAGAGATTGAGCTTGAGGAGGTTGAAGCCGTTCTGAAGCGCATTCAGCGTTTCGATCC
GGTAGGCGTGGCCGCAAGAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCGTGGCTTG
ATGAGGCGCGCTTAATCATCAGCGATTATCTGGATCTGTTGGCTAACCACGATTTCCGCACCCTGATGCGCGTCACGCGG
CTGAAAGAAGACGTGCTGAAAGAAGCGGTGAATCTGATACAGTCGCTCGATCCGCGCCCCGGTCAGTCGATCCAGACCAG
CGAACCCGAATACGTGATCCCGGATGTGCTGGTCCGAAAACACAATGGCCGCTGGGTCGTTGAACTGAATTCTGACAGTA
TTCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGTAACGACTCCGACAATCAATATATTCGT
AGCAATTTGCAGGAAGCGCGATGGTTGATCAAAAGTCTGGAGAGCCGTAATGATACGCTGCTTCGCGTCAGCCGCTGCAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTCAATACCGAGGGTGGCGGCGAAGCGTCCTCAACCGCGATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTGAGTGACAGTAAGTTAACCACCATGCTGTCCGAACAGGGTATTATGGTGG
CACGTCGTACTGTCGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.743

100

0.484

Multiple sequence alignment