Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4G81_RS01450 Genome accession   NZ_CP032913
Coordinates   304157..304624 (-) Length   155 a.a.
NCBI ID   WP_190322874.1    Uniprot ID   -
Organism   Helicobacter pylori strain 5-A-EK1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 299157..309624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4G81_RS01435 - 299553..300335 (-) 783 WP_139523967.1 glycosyltransferase family 2 protein -
  D4G81_RS01440 tlpB 300367..302064 (-) 1698 WP_139523968.1 methyl-accepting chemotaxis protein TlpB -
  D4G81_RS01445 - 302271..303971 (-) 1701 WP_338400420.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  D4G81_RS01450 luxS 304157..304624 (-) 468 WP_190322874.1 S-ribosylhomocysteine lyase Regulator
  D4G81_RS01455 - 304662..305804 (-) 1143 WP_139523970.1 cystathionine gamma-synthase -
  D4G81_RS01460 - 305829..306746 (-) 918 WP_201737691.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4G81_RS01465 - 306860..307442 (+) 583 Protein_277 hypothetical protein -
  D4G81_RS01470 dnaK 307675..309537 (-) 1863 WP_139523972.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17639.07 Da        Isoelectric Point: 6.8403

>NTDB_id=281109 D4G81_RS01450 WP_190322874.1 304157..304624(-) (luxS) [Helicobacter pylori strain 5-A-EK1]
MKTPKMNVESFNLDHTKVKAPYVRVADRKKGANGDVIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=281109 D4G81_RS01450 WP_190322874.1 304157..304624(-) (luxS) [Helicobacter pylori strain 5-A-EK1]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGA
TCGCAAAAAGGGCGCTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACA
TGCCAAGCTTGCATTCTTTAGAGCATTTAGTCGCTGAAATTATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAATCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCACAGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374