Detailed information NTG0028110

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: XFASM23_RS01880
• Genome accession: NC_010577
• Coordinates: 447124..449592 (+)
• Length: 822 a.a.
• NCBI ID: WP_012382452.1
• Uniprot ID: B2I800
• Organism: Xylella fastidiosa M23
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 442124..454592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XFASM23_RS01855 (XfasM23_0345)	-	443237..444022 (+)	786	WP_004089282.1	succinate dehydrogenase iron-sulfur subunit	-
XFASM23_RS01860 (XfasM23_0346)	-	444143..444391 (+)	249	WP_004089280.1	succinate dehydrogenase assembly factor 2	-
XFASM23_RS01865 (XfasM23_0347)	-	444414..444794 (+)	381	WP_011097604.1	hypothetical protein	-
XFASM23_RS01870 (XfasM23_0348)	-	444820..446061 (+)	1242	WP_004089276.1	lipoprotein-releasing ABC transporter permease subunit	-
XFASM23_RS01875 (XfasM23_0349)	lolD	446054..446776 (+)	723	WP_004089270.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
XFASM23_RS01880 (XfasM23_0350)	comA	447124..449592 (+)	2469	WP_012382452.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
XFASM23_RS01885 (XfasM23_0351)	exbB	449577..450239 (+)	663	WP_004085189.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
XFASM23_RS01890 (XfasM23_0352)	-	450244..450681 (+)	438	WP_004089267.1	biopolymer transporter ExbD	-
XFASM23_RS01895 (XfasM23_0353)	msbA	450699..452447 (+)	1749	WP_004089264.1	lipid A export permease/ATP-binding protein MsbA	-
XFASM23_RS01900 (XfasM23_0354)	lpxK	452444..453463 (+)	1020	WP_004089261.1	tetraacyldisaccharide 4'-kinase	-
XFASM23_RS01905 (XfasM23_0355)	-	453870..454559 (-)	690	WP_012382453.1	contractile injection system protein, VgrG/Pvc8 family	-

Sequence

Protein

• Length: 822 a.a.
• Molecular weight: 90428.40 Da
• Isoelectric Point: 9.3127

>NTDB_id=28110 XFASM23_RS01880 WP_012382452.1 447124..449592(+) (comA) [Xylella fastidiosa M23]
MDDMKPEQRHMLQRCWVDVLSVIRHAACLRYLAFPALLPSAVALLLGCLAALTLPRLPPVWVLWIFLFVGVMLAVVVRRV
AWCGVVLFGFANCCLHGQFGLRHQLSFALEGRDLVLRGRIVSLPVPETRRTRFLLRVDTDQDQEPALRGRLLQLSWYDEN
KAVVPGPRSALHAGSVWQLHVRLRAPHSLMNPGGFDSERYALAQGIVATGYVRMPTMARELAAATGINAWRERMSARIAD
AVLLEASVYLRALALGDTRGLSQQDWEVLRATGLTHLIAISGFHVGMVAGACALLVSLLWRDLAWRWPRPIAMALIAVPA
AAGYTVLAGASLPTVRTALMIGIVALARLTRRRAMPGHVLGLALLVVLVWDPLAILSAGFWLSFAGVAWLMWCMQDGHAA
SCRGFLSAQGVATLGLLPFTVALFGQVSFVGPLANLIAIPLWTFVVVPLALLGTALEALVPGWGSPMWRLGGNFFQWSWQ
LFEYLAQTDFALWWLPESDGVALGLALLGAFWLLLPRGTPGKWLALLLWLPLLWPERERPRPGEFEMQMLDVGQGLSIVV
RTSGHTLLYDAGPAVNDGFDAGERVVVPALRASGIRRLDALVASHADSDHVGGLPAVLKAYPVDISYAPPDAPLDVERRC
SAGDSWLWDGVQFRFLHPAPHSRYLGNESSCVLRIDTRWGSALLTGDIGKVVERGLLSQDRESVRADVVVVPHHGSAGSS
SLGFVRAVNARLALVSSGDGNRFGHPRCSVVESWSETADVLLTAHSGAVRIWVGQQGLQLRERRVWRRRFWDAVERRRSA
AILSATEDVSKERRRNETCWNW

Nucleotide

• Length: 2469 bp

>NTDB_id=28110 XFASM23_RS01880 WP_012382452.1 447124..449592(+) (comA) [Xylella fastidiosa M23]
ATGGACGATATGAAACCTGAGCAGCGACACATGTTGCAGCGATGTTGGGTTGACGTGTTAAGTGTGATCCGGCACGCAGC
GTGCCTGCGTTACCTCGCGTTTCCGGCGTTGTTGCCGAGTGCTGTTGCGTTGCTGCTGGGTTGTCTTGCTGCACTCACCT
TGCCGCGATTACCGCCCGTATGGGTGTTGTGGATTTTTCTGTTTGTCGGAGTAATGCTCGCTGTTGTCGTGCGCCGTGTT
GCTTGGTGCGGTGTGGTGTTGTTTGGTTTTGCTAACTGTTGCTTGCATGGTCAGTTTGGTTTGCGACATCAATTGTCGTT
CGCGTTGGAGGGCCGTGATCTGGTGTTACGTGGTCGGATCGTTTCTTTGCCGGTTCCAGAGACCAGGCGTACACGTTTCT
TGTTGCGTGTTGATACCGATCAAGATCAGGAACCAGCGCTGCGTGGTCGACTGCTGCAGTTATCCTGGTATGACGAGAAT
AAGGCGGTAGTACCGGGGCCACGCAGTGCATTGCATGCTGGATCTGTATGGCAGCTGCACGTGCGTCTGCGTGCGCCGCA
CAGTTTGATGAATCCCGGAGGTTTCGACAGCGAGCGTTATGCCCTAGCCCAGGGGATTGTTGCGACCGGTTACGTACGTA
TGCCGACGATGGCACGTGAGCTTGCGGCAGCCACTGGCATCAATGCTTGGCGGGAACGGATGTCTGCGCGTATTGCTGAT
GCGGTGTTGTTGGAAGCGTCGGTGTATTTACGTGCGTTGGCCTTGGGTGATACCCGGGGTTTGTCTCAACAGGATTGGGA
AGTATTGCGCGCTACAGGGCTGACGCATTTGATTGCGATCTCGGGGTTCCATGTCGGTATGGTCGCTGGTGCCTGTGCGT
TGCTTGTGTCGTTGCTGTGGCGAGATTTGGCTTGGCGTTGGCCGCGGCCAATCGCTATGGCACTCATTGCGGTACCGGCC
GCAGCCGGCTACACCGTCCTGGCTGGGGCGTCACTGCCCACAGTGAGAACCGCTTTGATGATCGGCATCGTCGCATTGGC
GCGCCTCACTCGGCGTCGTGCCATGCCGGGTCATGTCCTGGGGCTTGCCTTGCTTGTCGTACTTGTTTGGGATCCATTAG
CCATTCTTAGTGCTGGCTTCTGGCTCAGCTTTGCCGGTGTCGCTTGGTTAATGTGGTGTATGCAAGACGGTCATGCCGCG
TCTTGTCGTGGCTTCTTATCGGCACAAGGTGTTGCAACCCTTGGGTTATTACCATTCACCGTGGCTTTATTTGGTCAGGT
TTCGTTTGTTGGGCCTTTGGCTAACTTGATTGCGATTCCGTTATGGACCTTTGTCGTTGTACCGCTGGCGTTGTTAGGGA
CTGCGCTGGAAGCGTTAGTGCCAGGGTGGGGTAGCCCCATGTGGCGTTTGGGGGGGAATTTTTTCCAATGGAGTTGGCAG
CTATTCGAATACTTGGCACAGACTGATTTCGCATTGTGGTGGTTGCCGGAATCTGATGGTGTTGCATTGGGGTTGGCCTT
GCTGGGAGCGTTTTGGTTGCTGTTACCACGCGGTACGCCTGGTAAGTGGTTGGCGCTGTTGCTGTGGTTGCCTTTGTTGT
GGCCTGAGCGTGAGCGTCCCCGCCCCGGGGAGTTTGAGATGCAGATGCTGGACGTGGGGCAAGGACTGTCGATTGTGGTG
CGTACTTCAGGCCATACGTTGTTGTACGACGCAGGTCCAGCAGTGAATGATGGTTTCGATGCCGGTGAGCGTGTTGTGGT
GCCGGCATTACGTGCCAGTGGCATCCGTCGCTTGGATGCATTGGTGGCTAGTCATGCTGATAGTGATCACGTCGGAGGTT
TGCCCGCGGTCCTGAAGGCTTATCCGGTTGATATCAGCTACGCTCCTCCGGATGCTCCACTCGACGTTGAGCGCCGTTGC
AGTGCTGGGGACAGTTGGCTGTGGGATGGAGTCCAGTTTCGTTTCTTACATCCTGCACCGCATTCGAGGTATTTAGGTAA
CGAGTCCAGTTGTGTATTGCGTATCGACACGCGCTGGGGCAGTGCTTTGTTGACGGGTGACATCGGCAAAGTGGTCGAAC
GTGGTTTATTGAGTCAGGATCGTGAGAGTGTACGTGCCGATGTGGTGGTCGTACCGCATCATGGGAGCGCCGGTTCTTCC
TCGCTTGGGTTTGTCCGTGCGGTTAATGCGCGGTTAGCTTTGGTATCCAGTGGTGATGGTAACCGCTTCGGTCATCCGCG
CTGTTCGGTGGTGGAGAGCTGGAGTGAAACGGCAGATGTGTTGCTTACTGCGCATAGCGGCGCAGTACGGATTTGGGTTG
GACAGCAGGGTCTGCAGTTACGTGAACGCCGTGTTTGGCGTCGTCGATTCTGGGATGCGGTCGAACGTCGCCGATCCGCT
GCTATCCTATCCGCCACTGAAGATGTATCCAAAGAGCGTCGGAGAAACGAGACATGCTGGAACTGGTAA

Domains

Predicted by InterProScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (551-719)

• Domain of unknown function (DUF4131) (DUF4131) (59-215)

• Competence protein (Competence) (253-517)

3D structure

• AlphaFold DB: B2I800

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	36.439	100	0.376