Detailed information NTG0281098

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4G81_RS00930
• Genome accession: NZ_CP032913
• Coordinates: 193802..195037 (-)
• Length: 411 a.a.
• NCBI ID: WP_139523908.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 5-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 188802..200037

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4G81_RS00890	-	188921..190648 (-)	1728	WP_201737684.1	type IV secretory system conjugative DNA transfer family protein	-
D4G81_RS00895	-	190649..191206 (-)	558	WP_139523904.1	hypothetical protein	-
D4G81_RS00900	-	191207..191497 (-)	291	WP_000159810.1	hypothetical protein	-
D4G81_RS00905	-	191494..191949 (-)	456	WP_139523905.1	mobilization protein	-
D4G81_RS00910	-	191946..192887 (-)	942	WP_033756312.1	ATPase, T2SS/T4P/T4SS family	-
D4G81_RS00915	-	192887..193186 (-)	300	WP_000660141.1	hypothetical protein	-
D4G81_RS00920	-	193183..193446 (-)	264	WP_139523906.1	hypothetical protein	-
D4G81_RS00925	-	193436..193732 (-)	297	WP_139523907.1	hypothetical protein	-
D4G81_RS00930	comB10	193802..195037 (-)	1236	WP_139523908.1	DNA type IV secretion system protein ComB10	Machinery gene
D4G81_RS00935	-	195034..196575 (-)	1542	WP_139523909.1	TrbG/VirB9 family P-type conjugative transfer protein	-
D4G81_RS00940	-	196575..197561 (-)	987	WP_139523910.1	virB8 family protein	-
D4G81_RS00945	-	197691..199625 (-)	1935	WP_139524909.1	type IA DNA topoisomerase	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46412.49 Da
• Isoelectric Point: 10.0580

>NTDB_id=281098 D4G81_RS00930 WP_139523908.1 193802..195037(-) (comB10) [Helicobacter pylori strain 5-A-EK1]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQGLEKEYGSSGFKNFKRKNIASSENKLLRTITADRMIPAILITPISSEIGGSKIIAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=281098 D4G81_RS00930 WP_139523908.1 193802..195037(-) (comB10) [Helicobacter pylori strain 5-A-EK1]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAATGAAGAAGAAAAAACCCGCCTGGTAATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCCAAA
GAAAAACAAGGACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATATAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAATCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCCAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATCATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAACATTATCGCTCAAATCATGCGAGATCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	55.517	70.56	0.392