Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   XFASM23_RS00620 Genome accession   NC_010577
Coordinates   149447..150121 (-) Length   224 a.a.
NCBI ID   WP_011097508.1    Uniprot ID   Q87F21
Organism   Xylella fastidiosa M23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 144447..155121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFASM23_RS00605 (XfasM23_0107) - 145902..146717 (-) 816 WP_004087583.1 SDR family NAD(P)-dependent oxidoreductase -
  XFASM23_RS00610 (XfasM23_0108) - 146846..147592 (-) 747 WP_004087582.1 SPOR domain-containing protein -
  XFASM23_RS00615 (XfasM23_0109) argS 147632..149320 (-) 1689 WP_011097507.1 arginine--tRNA ligase -
  XFASM23_RS00620 (XfasM23_0110) radC 149447..150121 (-) 675 WP_011097508.1 DNA repair protein RadC Machinery gene
  XFASM23_RS00625 (XfasM23_0111) coaBC 150219..151448 (+) 1230 WP_011097509.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  XFASM23_RS00630 (XfasM23_0112) dut 151445..151912 (+) 468 WP_004087579.1 dUTP diphosphatase -
  XFASM23_RS13185 (XfasM23_0113) - 151926..154469 (+) 2544 WP_012382416.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24590.10 Da        Isoelectric Point: 8.2711

>NTDB_id=28109 XFASM23_RS00620 WP_011097508.1 149447..150121(-) (radC) [Xylella fastidiosa M23]
MHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDLMRLPGLGLARAC
KLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVLFLDNRHRAISFEELFHGTINGAEVHPREVVRR
ALTLNAAAVIVGHNHPSGNREPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=28109 XFASM23_RS00620 WP_011097508.1 149447..150121(-) (radC) [Xylella fastidiosa M23]
ATGCACATCAACAACTGGCCTACGCATGAACGACCACGTGAAAAACTGCTGGCCCACGGTGCCGCCACACTTTCGGATGC
AGAACTGCTCGCAATCTTCCTAGGCTCCGGCCTACGCGGTCATGACGCCGTGCAAACTGCACGTAACCTGCTGCACACTC
ATGGTCCACTACGAGAACTGCTGGACCGACCTCCAGGTGATCTCATGCGCCTGCCCGGGTTAGGTCTGGCACGCGCATGC
AAACTCACCGCAGCACTGGAATTAAGCACCCGCCACCTGGCAGCCGCCCTGCAACGCGGCGCAAGTATCCACGATCCAAT
CAGCGCCGGACGCTATTTCGCACAGCGCCTACGAGCGAATCCAAATGAAGTCTTCGCCGTCCTATTTTTAGACAATAGGC
ACCGCGCGATCAGCTTTGAAGAATTGTTCCACGGCACCATCAACGGTGCCGAAGTACATCCACGCGAAGTCGTACGACGC
GCATTAACTCTGAACGCAGCGGCAGTGATCGTCGGCCATAATCACCCATCCGGTAATCGCGAACCATCACCAGCCGACCA
AATGATCACCCAACGCTTGAAAAACGCCTTAGACCTCATCGACGTGCGCCTAGTCGACCACTTCGTGATTGGTGACGGTG
CGCCGGTCTCATTCGCCGAACATGGCTGGCTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87F21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.662

95.089

0.415

Multiple sequence alignment