Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4H18_RS07045 Genome accession   NZ_CP032912
Coordinates   1422442..1422909 (+) Length   155 a.a.
NCBI ID   WP_201737549.1    Uniprot ID   -
Organism   Helicobacter pylori strain 13-A-EK8     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1417442..1427909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H18_RS07025 dnaK 1417713..1419575 (+) 1863 WP_139523212.1 molecular chaperone DnaK -
  D4H18_RS07030 - 1419807..1420091 (+) 285 WP_000235995.1 hypothetical protein -
  D4H18_RS07035 - 1420332..1421249 (+) 918 WP_201737548.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4H18_RS07040 - 1421270..1422412 (+) 1143 WP_139523216.1 cystathionine gamma-synthase -
  D4H18_RS07045 luxS 1422442..1422909 (+) 468 WP_201737549.1 S-ribosylhomocysteine lyase Regulator
  D4H18_RS07050 - 1423064..1424809 (+) 1746 WP_139523217.1 5'-nucleotidase C-terminal domain-containing protein -
  D4H18_RS07055 tlpB 1425019..1426716 (+) 1698 WP_139523219.1 methyl-accepting chemotaxis protein TlpB -
  D4H18_RS07060 - 1426748..1427530 (+) 783 WP_139523221.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17737.22 Da        Isoelectric Point: 6.6039

>NTDB_id=281083 D4H18_RS07045 WP_201737549.1 1422442..1422909(+) (luxS) [Helicobacter pylori strain 13-A-EK8]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHANYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQDLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=281083 D4H18_RS07045 WP_201737549.1 1422442..1422909(+) (luxS) [Helicobacter pylori strain 13-A-EK8]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCCGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGCTTCAAGCAACCCAACCAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCTAATTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACAGGGTTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAAAC
GATGCAAGATGTGTTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCGCAAGATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAATGGTCTGAAGTTGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374