Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4H18_RS01690 Genome accession   NZ_CP032912
Coordinates   321705..322754 (-) Length   349 a.a.
NCBI ID   WP_139522549.1    Uniprot ID   -
Organism   Helicobacter pylori strain 13-A-EK8     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 316705..327754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H18_RS01665 rpsG 316989..317456 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  D4H18_RS01670 fusA 317468..319546 (+) 2079 WP_053577463.1 elongation factor G -
  D4H18_RS01675 - 320088..321017 (-) 930 WP_029700698.1 aldo/keto reductase -
  D4H18_RS01685 - 321296..321517 (+) 222 WP_000744193.1 hypothetical protein -
  D4H18_RS01690 waaF 321705..322754 (-) 1050 WP_139522549.1 lipopolysaccharide heptosyltransferase II Regulator
  D4H18_RS01695 hisS 322816..324144 (+) 1329 WP_139522550.1 histidine--tRNA ligase -
  D4H18_RS01700 asd 324131..325171 (+) 1041 WP_139522551.1 aspartate-semialdehyde dehydrogenase -
  D4H18_RS01705 - 325603..326679 (+) 1077 WP_139522552.1 DUF874 family protein -
  D4H18_RS01710 - 326911..327654 (-) 744 WP_139522553.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39542.39 Da        Isoelectric Point: 9.8644

>NTDB_id=281058 D4H18_RS01690 WP_139522549.1 321705..322754(-) (waaF) [Helicobacter pylori strain 13-A-EK8]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFILVGPQITCELFKKDEKIESVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAKTAAVLLEKGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=281058 D4H18_RS01690 WP_139522549.1 321705..322754(-) (waaF) [Helicobacter pylori strain 13-A-EK8]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTATCTTAGTGGGCCCACAAATCACTTGTGAACTTTTCA
AAAAAGATGAAAAAATAGAATCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCCAAAACCGCTGCTGTTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTGTTCAAT
AACGCTTACAATCTGTGCGGGAAAACCAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.235

97.421

0.372