Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C7S18_RS21400 Genome accession   NZ_CP027860
Coordinates   5527138..5528424 (+) Length   428 a.a.
NCBI ID   WP_106893487.1    Uniprot ID   A0A2P1PXK9
Organism   Ahniella affigens strain D13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5522138..5533424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S18_RS21380 (C7S18_21375) - 5522361..5523266 (-) 906 WP_106893483.1 DUF2145 domain-containing protein -
  C7S18_RS21385 (C7S18_21380) - 5523263..5523679 (-) 417 WP_146152058.1 hypothetical protein -
  C7S18_RS21390 (C7S18_21385) - 5523883..5525187 (+) 1305 WP_106893485.1 amidohydrolase -
  C7S18_RS21395 (C7S18_21390) pilB 5525401..5527134 (+) 1734 WP_106893486.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C7S18_RS21400 (C7S18_21395) pilC 5527138..5528424 (+) 1287 WP_106893487.1 type II secretion system F family protein Machinery gene
  C7S18_RS21405 (C7S18_21400) - 5528441..5529103 (+) 663 WP_240623941.1 alpha/beta hydrolase -
  C7S18_RS21410 (C7S18_21405) - 5529311..5530003 (-) 693 WP_106893488.1 lipid-binding SYLF domain-containing protein -
  C7S18_RS21415 (C7S18_21410) - 5530137..5531024 (-) 888 WP_106893489.1 hypothetical protein -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 46680.09 Da        Isoelectric Point: 10.1756

>NTDB_id=281056 C7S18_RS21400 WP_106893487.1 5527138..5528424(+) (pilC) [Ahniella affigens strain D13]
MATATAPRTTGRQTAVKAGAKQPAQPRYEQLQTFYWSAKDKRGKVMKGEMMGKNENLVKAELRKQGLTPTTVSQKKAGMF
AKRGKVSAQEIAIFARQLATMMQSGVPMVQAFDIIASGQKNAAMSEMLTAVKNEIEGGSSLYEALGKFPVQFDELFRNLV
RAGEQAGVLDTVLDTVATYKENIEAIKGKIKKALFYPAAVIAVALIVSAILLIFVIPQFEAVFKGFGTDLPAFTQLYVKA
SKFMVAYWWVVLFIGIAAAVTFLQAYKRSPAFAHFLDRMMLKLPVIGGILHSSAIARFSRTLALTFKSGVPLVEALETVG
GATGSMIYNEATKRIKEDVAVGYQLNIAMRQVNLFPPMVIQMTAIGEEAGSLDTMLTKVAEFFEREVNNAVDALSSLLEP
FIMVIIGTMVGSMVIAMYLPIFKMAATV

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=281056 C7S18_RS21400 WP_106893487.1 5527138..5528424(+) (pilC) [Ahniella affigens strain D13]
ATGGCCACCGCTACCGCCCCCCGCACCACAGGTCGTCAAACCGCCGTCAAGGCTGGTGCGAAACAGCCTGCTCAGCCGCG
CTACGAACAACTGCAGACCTTCTACTGGTCAGCCAAGGACAAGCGCGGCAAGGTCATGAAAGGCGAAATGATGGGGAAGA
ACGAAAACCTCGTCAAAGCCGAGCTGCGCAAGCAAGGGCTGACGCCGACCACGGTGTCACAGAAGAAAGCGGGCATGTTC
GCCAAGCGTGGCAAGGTGTCCGCGCAGGAAATTGCGATTTTCGCCCGTCAGCTCGCAACGATGATGCAGTCGGGCGTGCC
CATGGTGCAGGCCTTCGACATCATTGCCAGTGGCCAGAAAAACGCCGCGATGTCGGAAATGCTGACGGCGGTCAAGAACG
AAATCGAAGGCGGCTCCAGCCTGTACGAGGCGCTCGGCAAATTCCCAGTCCAGTTCGACGAGTTGTTCCGCAATCTGGTG
CGCGCCGGTGAGCAGGCTGGTGTGCTCGATACCGTTCTGGACACCGTCGCCACGTACAAGGAAAACATCGAGGCGATCAA
GGGCAAGATCAAGAAGGCGCTCTTTTATCCCGCAGCGGTAATCGCGGTCGCGTTGATCGTCAGCGCGATCTTGCTGATTT
TCGTGATTCCGCAGTTCGAAGCCGTGTTCAAAGGCTTCGGCACCGATCTGCCGGCGTTCACCCAGCTCTATGTGAAGGCT
TCGAAGTTCATGGTGGCGTACTGGTGGGTTGTGCTCTTTATCGGCATCGCGGCCGCCGTTACGTTCTTACAGGCTTACAA
GCGCTCGCCAGCCTTTGCGCATTTTCTCGATCGAATGATGCTCAAGCTTCCGGTCATTGGCGGCATTCTGCACAGTTCGG
CCATCGCCCGCTTCTCGCGTACGCTGGCGCTGACATTCAAGTCGGGCGTACCGCTTGTGGAAGCGCTGGAAACTGTGGGT
GGTGCCACCGGCAGCATGATTTACAACGAAGCCACCAAACGAATCAAAGAGGACGTGGCCGTTGGCTACCAGTTGAACAT
CGCGATGCGGCAGGTCAACCTGTTTCCCCCGATGGTGATACAGATGACTGCGATCGGCGAAGAGGCCGGCTCGCTCGATA
CGATGCTGACCAAAGTCGCCGAGTTCTTCGAGCGTGAGGTCAACAACGCGGTCGATGCCCTGAGCAGCTTGTTGGAACCG
TTCATCATGGTGATCATCGGTACGATGGTCGGCAGCATGGTGATCGCCATGTACCTGCCCATCTTCAAGATGGCAGCGAC
GGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(298-420)

Type II secretion system (T2SS), protein F (T2SSF)

(94-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P1PXK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.386

93.224

0.507
  pilC Acinetobacter baumannii D1279779

51.485

94.393

0.486
  pilC Pseudomonas stutzeri DSM 10701

51.899

92.29

0.479
  pilC Acinetobacter baylyi ADP1

49.877

95.093

0.474
  pilG Neisseria meningitidis 44/76-A

42.857

91.589

0.393
  pilG Neisseria gonorrhoeae MS11

42.857

91.589

0.393
  pilC Vibrio campbellii strain DS40M4

39.206

94.159

0.369
  pilC Vibrio cholerae strain A1552

38.653

93.692

0.362

Multiple sequence alignment