Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HSM_RS09620 Genome accession   NC_010519
Coordinates   2117343..2117993 (-) Length   216 a.a.
NCBI ID   WP_012340956.1    Uniprot ID   A0A9Q6YZQ0
Organism   Histophilus somni 2336     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2112343..2122993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSM_RS09600 (HSM_1863) cyaY 2113202..2113510 (-) 309 WP_012340953.1 iron donor protein CyaY -
  HSM_RS10705 (HSM_1864) lptM 2113635..2113766 (+) 132 WP_012340954.1 LPS translocon maturation chaperone LptM -
  HSM_RS09605 (HSM_1865) lysA 2113788..2115041 (+) 1254 WP_012340955.1 diaminopimelate decarboxylase -
  HSM_RS09610 (HSM_1866) - 2115305..2116813 (+) 1509 WP_011609857.1 sodium-dependent transporter -
  HSM_RS10710 - 2116816..2116908 (+) 93 WP_041604420.1 methionine/alanine import family NSS transporter small subunit -
  HSM_RS09620 (HSM_1867) sxy/tfoX 2117343..2117993 (-) 651 WP_012340956.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24719.36 Da        Isoelectric Point: 10.5049

>NTDB_id=28103 HSM_RS09620 WP_012340956.1 2117343..2117993(-) (sxy/tfoX) [Histophilus somni 2336]
MTKSLKDTENIRSELTELIGTITVKNLFSGYGLFKKGLMFGLYQQGKFYIRAEKELAKYLESLGALSYLALTPNPQLNIG
NYYLLPKEITQNKEHFRQILYLSIAQTRAKKIAQELARKKRIKDLPNLSIKHERLLSKIHIKDIKSFKLKGAANCYIELK
LSGIPVNLILFWNLTAALLYKNVNVLTKTEKEQALKKLNKGLERAGLKPVEIILLQ

Nucleotide


Download         Length: 651 bp        

>NTDB_id=28103 HSM_RS09620 WP_012340956.1 2117343..2117993(-) (sxy/tfoX) [Histophilus somni 2336]
ATGACCAAATCATTAAAAGACACTGAAAATATTAGAAGTGAACTTACCGAATTGATAGGAACTATAACTGTGAAAAATCT
TTTTTCTGGTTATGGTTTATTTAAGAAAGGTCTTATGTTTGGTTTATACCAGCAAGGAAAATTTTATATTCGAGCAGAGA
AGGAATTAGCTAAATACCTAGAAAGCCTAGGTGCTTTATCATATTTAGCTTTAACCCCAAACCCTCAACTAAATATAGGA
AATTATTATCTATTGCCAAAAGAAATTACACAGAATAAGGAACATTTTCGTCAAATTCTCTATCTATCTATTGCTCAAAC
TAGAGCAAAGAAAATTGCACAAGAACTTGCTCGGAAAAAAAGAATAAAAGATCTCCCAAATCTTTCGATAAAACACGAAA
GGCTTCTTTCTAAAATACACATTAAAGATATAAAATCCTTTAAATTAAAAGGAGCAGCAAATTGCTACATAGAGTTAAAA
CTCTCAGGTATTCCTGTAAATCTCATTTTATTTTGGAATCTTACTGCCGCACTTTTATACAAGAATGTCAATGTATTGAC
TAAAACAGAAAAAGAACAGGCTTTAAAGAAACTTAATAAAGGTCTAGAGAGAGCAGGATTAAAACCTGTTGAGATTATAC
TTTTACAATAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(17-106)

TfoX C-terminal domain (TfoX_C)

(119-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6YZQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

39.801

93.056

0.37

Multiple sequence alignment