Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4H43_RS01425 Genome accession   NZ_CP032911
Coordinates   270589..271638 (-) Length   349 a.a.
NCBI ID   WP_139543780.1    Uniprot ID   -
Organism   Helicobacter pylori strain 19-A-EK3     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 265589..276638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H43_RS01400 rpsG 265815..266282 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  D4H43_RS01405 fusA 266294..268372 (+) 2079 WP_139543778.1 elongation factor G -
  D4H43_RS01410 - 268907..269896 (-) 990 WP_139543779.1 aldo/keto reductase -
  D4H43_RS08435 - 269878..270099 (-) 222 WP_236635794.1 hypothetical protein -
  D4H43_RS01420 - 270116..270442 (+) 327 WP_000744162.1 hypothetical protein -
  D4H43_RS01425 waaF 270589..271638 (-) 1050 WP_139543780.1 lipopolysaccharide heptosyltransferase II Regulator
  D4H43_RS01430 hisS 271700..273028 (+) 1329 WP_108388739.1 histidine--tRNA ligase -
  D4H43_RS01435 asd 273015..274055 (+) 1041 WP_139543781.1 aspartate-semialdehyde dehydrogenase -
  D4H43_RS01440 - 274486..275604 (+) 1119 WP_139548773.1 DUF874 family protein -
  D4H43_RS01445 - 275791..276534 (-) 744 WP_139543783.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39523.17 Da        Isoelectric Point: 9.3714

>NTDB_id=281012 D4H43_RS01425 WP_139543780.1 270589..271638(-) (waaF) [Helicobacter pylori strain 19-A-EK3]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPTITCELFKKDEKIEAVFIDNTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAITAAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSATLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCAKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNERNHLCMKSIAPLEVLEAARTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=281012 D4H43_RS01425 WP_139543780.1 270589..271638(-) (waaF) [Helicobacter pylori strain 19-A-EK3]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTAGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACAACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTCTATTCCGCTTTTTTACTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAATATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTACTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTCTAAAACTCATCAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGCAAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGCGCAAACCCCCTTAATCGCTCTTTTTGGTCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTAAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAGAAACCACTTGTGCATGAAATCTATCGCGCCCCTTGAAGTCCTAGAAGCCGCTCGCACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.572

99.14

0.372

Multiple sequence alignment