Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4H71_RS06940 Genome accession   NZ_CP032910
Coordinates   1406193..1406651 (+) Length   152 a.a.
NCBI ID   WP_198993549.1    Uniprot ID   -
Organism   Helicobacter pylori strain 20-A-EK1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1401193..1411651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H71_RS06920 dnaK 1401264..1403126 (+) 1863 WP_000520980.1 molecular chaperone DnaK -
  D4H71_RS06925 - 1403386..1403956 (-) 571 Protein_1316 hypothetical protein -
  D4H71_RS06930 - 1404075..1404992 (+) 918 WP_201736970.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4H71_RS06935 - 1405013..1406155 (+) 1143 WP_139548553.1 cystathionine gamma-synthase -
  D4H71_RS06940 luxS 1406193..1406651 (+) 459 WP_198993549.1 S-ribosylhomocysteine lyase Regulator
  D4H71_RS06945 - 1406794..1408539 (+) 1746 WP_139548554.1 5'-nucleotidase C-terminal domain-containing protein -
  D4H71_RS06950 tlpB 1408743..1410440 (+) 1698 WP_139548555.1 methyl-accepting chemotaxis protein TlpB -
  D4H71_RS06955 - 1410472..1411236 (+) 765 WP_139548556.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17313.70 Da        Isoelectric Point: 6.6035

>NTDB_id=281000 D4H71_RS06940 WP_198993549.1 1406193..1406651(+) (luxS) [Helicobacter pylori strain 20-A-EK1]
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDVIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYTEVLEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=281000 D4H71_RS06940 WP_198993549.1 1406193..1406651(+) (luxS) [Helicobacter pylori strain 20-A-EK1]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGATCGCAAAAA
GGGCGTTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAGCAACCCAACAAAGATCACATGGACATGCCAAGCT
TGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGGTTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGGTTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGCGCAC
AGAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

92.763

0.388

Multiple sequence alignment