Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D4H71_RS04085 Genome accession   NZ_CP032910
Coordinates   834453..835973 (-) Length   506 a.a.
NCBI ID   WP_139548195.1    Uniprot ID   -
Organism   Helicobacter pylori strain 20-A-EK1     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 829453..840973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H71_RS04070 hofF 829890..831389 (+) 1500 WP_139548192.1 outer membrane beta-barrel protein HofF -
  D4H71_RS04075 - 831667..832332 (-) 666 WP_139548193.1 restriction endonuclease subunit S -
  D4H71_RS04080 - 832368..834428 (-) 2061 WP_139548194.1 heavy metal translocating P-type ATPase -
  D4H71_RS04085 comM 834453..835973 (-) 1521 WP_139548195.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D4H71_RS04090 def 835979..836503 (-) 525 WP_139548196.1 peptide deformylase -
  D4H71_RS04095 clpP 836508..837095 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D4H71_RS04100 tig 837116..838471 (-) 1356 WP_139548197.1 trigger factor -
  D4H71_RS04105 - 838583..839419 (-) 837 WP_139548198.1 outer membrane protein -
  D4H71_RS04110 hpaA 839448..840230 (-) 783 WP_000646674.1 flagellar sheath lipoprotein HpaA -
  D4H71_RS04115 moaC 840349..840825 (-) 477 WP_139548199.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57226.19 Da        Isoelectric Point: 8.3918

>NTDB_id=280984 D4H71_RS04085 WP_139548195.1 834453..835973(-) (comM) [Helicobacter pylori strain 20-A-EK1]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKIIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPETKADTHTKKLPFKTIELNDREYYFSDTYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSSTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLSAEAKKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=280984 D4H71_RS04085 WP_139548195.1 834453..835973(-) (comM) [Helicobacter pylori strain 20-A-EK1]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCCGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAATTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCTCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCACCCCCATGCCAAAA
TCATTGCGCCTAAGGCGAATGAAGAGCTTTTTTCGCTTATTCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAACCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAGAGAGTATTATTTTTCAGACACCTACGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGCCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCTTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCAAGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCTCAACCAAAGCATGCCGTTGCCAAG
ACAGAGAGATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAGTTAGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAACGAAGAGCAGATAGAACGATTTTGCCCTTTAAGTGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTGAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.628

100

0.976
  comM Acinetobacter baylyi ADP1

36.399

100

0.368