Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4H71_RS01670 Genome accession   NZ_CP032910
Coordinates   324180..325229 (-) Length   349 a.a.
NCBI ID   WP_139547897.1    Uniprot ID   -
Organism   Helicobacter pylori strain 20-A-EK1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 319180..330229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H71_RS01645 rpsG 319256..319723 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  D4H71_RS01650 fusA 319735..321813 (+) 2079 WP_139547895.1 elongation factor G -
  D4H71_RS01655 - 322334..323323 (-) 990 WP_097696223.1 aldo/keto reductase -
  D4H71_RS01665 - 323542..323994 (+) 453 WP_120924028.1 flagellar protein -
  D4H71_RS01670 waaF 324180..325229 (-) 1050 WP_139547897.1 lipopolysaccharide heptosyltransferase II Regulator
  D4H71_RS01675 hisS 325291..326619 (+) 1329 WP_139547898.1 histidine--tRNA ligase -
  D4H71_RS01680 asd 326606..327646 (+) 1041 WP_139547899.1 aspartate-semialdehyde dehydrogenase -
  D4H71_RS01685 - 328080..329210 (+) 1131 WP_139547900.1 DUF874 family protein -
  D4H71_RS01690 - 329447..330190 (-) 744 WP_001865731.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39424.08 Da        Isoelectric Point: 9.5712

>NTDB_id=280976 D4H71_RS01670 WP_139547897.1 324180..325229(-) (waaF) [Helicobacter pylori strain 20-A-EK1]
MSINAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITSNNHFYSAFLLYATKTPVRIGFAQSFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIEHIAVLDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=280976 D4H71_RS01670 WP_139547897.1 324180..325229(-) (waaF) [Helicobacter pylori strain 20-A-EK1]
ATGAGCATAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGTCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTCAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATCTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCCAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTAATAGAGCACATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGTGGTCCTATGCATGTGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTAAACCACCATTTAAGCTGTGCACCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.427

97.994

0.367

Multiple sequence alignment