Detailed information NTG0028097

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VC0395_RS16595
• Genome accession: NC_009457
• Coordinates: 2397911..2398918 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae O395
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2392911..2403918

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VC0395_RS16570 (VC0395_A2245)	rraA	2393486..2394001 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
VC0395_RS16575 (VC0395_A2246)	-	2394076..2394993 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VC0395_RS16580 (VC0395_A2247)	hslU	2395097..2396428 (-)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
VC0395_RS16585 (VC0395_A2248)	hslV	2396494..2397051 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
VC0395_RS16590 (VC0395_A2249)	-	2397188..2397739 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
VC0395_RS16595 (VC0395_A2250)	cytR	2397911..2398918 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
VC0395_RS16600 (VC0395_A2251)	priA	2399224..2401428 (-)	2205	WP_001247858.1	primosomal protein N'	-
VC0395_RS16605 (VC0395_A2252)	rpmE	2401683..2401901 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
VC0395_RS16610 (VC0395_A2254)	-	2402209..2403486 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
VC0395_RS16615 (VC0395_A2255)	metJ	2403597..2403914 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=28097 VC0395_RS16595 WP_000224452.1 2397911..2398918(-) (cytR) [Vibrio cholerae O395]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=28097 VC0395_RS16595 WP_000224452.1 2397911..2398918(-) (cytR) [Vibrio cholerae O395]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904