Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D4I01_RS03280 Genome accession   NZ_CP032909
Coordinates   640791..642311 (+) Length   506 a.a.
NCBI ID   WP_139542962.1    Uniprot ID   -
Organism   Helicobacter pylori strain 21-A-EK1     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 635791..647311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I01_RS03250 moaC 635932..636408 (+) 477 WP_039092497.1 cyclic pyranopterin monophosphate synthase MoaC -
  D4I01_RS03255 hpaA 636527..637309 (+) 783 WP_000646641.1 flagellar sheath lipoprotein HpaA -
  D4I01_RS03260 - 637345..638181 (+) 837 WP_139542960.1 outer membrane protein -
  D4I01_RS03265 tig 638293..639648 (+) 1356 WP_139542961.1 trigger factor -
  D4I01_RS03270 clpP 639669..640256 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D4I01_RS03275 def 640261..640785 (+) 525 WP_078271548.1 peptide deformylase -
  D4I01_RS03280 comM 640791..642311 (+) 1521 WP_139542962.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D4I01_RS03285 - 642336..644396 (+) 2061 WP_139542963.1 heavy metal translocating P-type ATPase -
  D4I01_RS07960 - 644437..645009 (+) 573 WP_236635057.1 restriction endonuclease subunit S -
  D4I01_RS07965 - 644993..645667 (+) 675 WP_236635058.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57278.31 Da        Isoelectric Point: 8.5412

>NTDB_id=280940 D4I01_RS03280 WP_139542962.1 640791..642311(+) (comM) [Helicobacter pylori strain 21-A-EK1]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSTYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNFEAKKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=280940 D4I01_RS03280 WP_139542962.1 640791..642311(+) (comM) [Helicobacter pylori strain 21-A-EK1]
ATGATTAACACGATATTTTGCGCAACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAACTCTATTCAAGAAGCCAAGCAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCTAAAG
TCATCGCGCCTAAGGCTAATGAGGAGCTTTTTTCGCTCATCCCTAATTTGCAATGTTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAATTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCTTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CACCTATTACCCCTTAAGGAGTTTTAGAAATCCCCACCAAAGCGCTTCAAAATCCAGCATTTTAGGTTCAAGCTCTCTAA
GAGAGCCAAAACCCGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTACCTCATTTTAAAAAGGAT
ATTTTAGAAGCCTTGAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAGATTGAATACGATAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCGACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAGTTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATTTTGAAG
CAAAAAAGTTGTTGGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGTTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.233

100

0.972
  comM Acinetobacter baylyi ADP1

36.204

100

0.366