Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   B7G68_RS11890 Genome accession   NZ_CP027850
Coordinates   2531982..2533364 (+) Length   460 a.a.
NCBI ID   WP_013079429.1    Uniprot ID   D5VH58
Organism   Caulobacter segnis strain TK0059     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2526982..2538364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7G68_RS11875 (B7G68_11870) - 2528389..2529906 (+) 1518 WP_013079427.1 replicative DNA helicase -
  B7G68_RS11880 (B7G68_11875) - 2530102..2530788 (+) 687 WP_106907181.1 MarC family protein -
  B7G68_RS11885 (B7G68_11880) alr 2530828..2531910 (+) 1083 WP_013079428.1 alanine racemase -
  B7G68_RS11890 (B7G68_11885) radA 2531982..2533364 (+) 1383 WP_013079429.1 DNA repair protein RadA Machinery gene
  B7G68_RS11895 (B7G68_11890) - 2533361..2533993 (+) 633 WP_013079430.1 CvpA family protein -
  B7G68_RS11900 (B7G68_11895) purF 2533990..2535492 (+) 1503 WP_013079431.1 amidophosphoribosyltransferase -
  B7G68_RS11905 (B7G68_11900) - 2535505..2536488 (+) 984 WP_013079432.1 bile acid:sodium symporter family protein -
  B7G68_RS11910 (B7G68_11905) - 2536537..2537292 (+) 756 WP_013079433.1 SDR family NAD(P)-dependent oxidoreductase -
  B7G68_RS11915 (B7G68_11910) - 2537311..2538066 (-) 756 WP_013079434.1 hypothetical protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47804.68 Da        Isoelectric Point: 5.5968

>NTDB_id=280936 B7G68_RS11890 WP_013079429.1 2531982..2533364(+) (radA) [Caulobacter segnis strain TK0059]
MARDGAVYACQSCGAVQTKWSGQCPACQSWNTLVEEVGTRPPGALSTTKATRVRGLQFTGLESETAPPPRILTGVDEFDR
VCGGGVVPGSAILIGGDPGVGKSTLLLQVCASAAARGVSCAYISGEEAVEQIRGRADRMGLSKSNVSLAAETALRDILDG
LKRDNFDLVVIDSIQTMWSDAHEAGPGTVTQVRACATELVRLAKKKGVAILLVGHVTKDGQIAGPRVVEHLVDAVLSFEG
ERGYPFRILRGAKNRFGATDEIGVFEMGDVGLREVKNPSALFLNEGGERAAGAAVFAGIEGSRPVLVEFQALVAPSAYGT
PRRAVVGWDSGRLAMVLAVLEARCGLGFGDKDVYLNVAGGLRITEPAADLAAAAALASSALDVALPQDCVVFGEVSLSGE
VRPVSRMETRLKEAAKLGFGRALGPLAGLPEGGGSLPVAGVARLTDAVRRIGDEIWTSLT

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=280936 B7G68_RS11890 WP_013079429.1 2531982..2533364(+) (radA) [Caulobacter segnis strain TK0059]
ATGGCCCGCGACGGCGCCGTCTACGCCTGCCAGTCCTGCGGCGCAGTCCAGACCAAGTGGTCCGGCCAGTGTCCCGCCTG
TCAAAGCTGGAACACCCTGGTCGAGGAGGTCGGCACCAGGCCGCCCGGCGCCCTGTCGACGACCAAGGCGACGCGCGTGC
GCGGCCTGCAGTTCACGGGCCTGGAGAGTGAAACGGCGCCTCCGCCGCGCATCCTGACCGGCGTCGACGAGTTCGATCGG
GTCTGCGGCGGCGGCGTGGTGCCCGGCTCAGCCATCCTGATCGGCGGGGACCCTGGCGTCGGCAAGTCCACCCTGCTGCT
GCAGGTCTGCGCCAGCGCCGCCGCGCGCGGGGTTTCGTGCGCCTACATCTCGGGCGAAGAGGCCGTCGAGCAGATCCGCG
GCCGCGCCGACCGCATGGGGCTGTCGAAGTCGAACGTCAGCCTGGCCGCGGAGACCGCGCTGCGCGACATCCTGGACGGC
CTCAAGCGCGACAACTTCGATCTCGTGGTCATCGACTCGATCCAGACGATGTGGAGCGACGCCCATGAGGCCGGGCCCGG
CACGGTCACCCAGGTCCGCGCCTGCGCCACCGAGCTGGTCCGCCTGGCCAAGAAGAAGGGCGTGGCGATCCTGCTGGTCG
GCCACGTCACCAAGGATGGCCAGATCGCCGGGCCCCGCGTCGTCGAGCACCTAGTTGACGCCGTGCTCAGCTTCGAGGGC
GAGCGCGGCTATCCGTTCCGCATCCTGCGCGGCGCCAAGAACCGTTTCGGGGCCACCGACGAGATCGGGGTGTTCGAGAT
GGGCGATGTCGGCCTACGCGAGGTCAAGAACCCCTCGGCCCTGTTCCTGAACGAGGGTGGCGAGCGCGCGGCCGGCGCGG
CGGTGTTCGCCGGCATCGAAGGCAGCCGGCCCGTCCTGGTGGAATTTCAGGCCCTGGTCGCGCCTTCCGCGTACGGAACG
CCTCGCCGGGCGGTCGTCGGATGGGATTCAGGGCGCCTGGCCATGGTGCTCGCCGTACTCGAGGCCCGATGCGGCCTTGG
TTTTGGCGACAAGGACGTCTATCTGAACGTCGCCGGCGGCCTGCGCATTACCGAACCGGCGGCGGATCTCGCGGCGGCGG
CGGCCTTGGCCTCTTCCGCCCTGGACGTCGCCCTGCCCCAGGACTGCGTCGTGTTCGGCGAAGTCAGTCTGTCGGGCGAA
GTCAGGCCCGTCAGCCGGATGGAGACTCGTTTGAAGGAAGCCGCGAAATTGGGATTTGGCCGGGCGCTGGGACCGCTCGC
CGGCCTGCCTGAAGGCGGCGGATCGCTGCCGGTCGCGGGGGTGGCCCGCCTGACCGACGCCGTGCGCCGGATCGGCGACG
AGATCTGGACGAGCCTGACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(340-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(85-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5VH58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.237

99.783

0.491
  radA Streptococcus pneumoniae Rx1

45.652

100

0.457
  radA Streptococcus pneumoniae D39

45.652

100

0.457
  radA Streptococcus pneumoniae TIGR4

45.652

100

0.457
  radA Streptococcus pneumoniae R6

45.652

100

0.457
  radA Streptococcus mitis SK321

45.336

100

0.454
  radA Streptococcus mitis NCTC 12261

45.119

100

0.452

Multiple sequence alignment