Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4I31_RS06885 Genome accession   NZ_CP032908
Coordinates   1434327..1435376 (+) Length   349 a.a.
NCBI ID   WP_139535120.1    Uniprot ID   -
Organism   Helicobacter pylori strain 23-A-EK1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1429327..1440376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I31_RS06865 - 1429478..1430221 (+) 744 WP_139535116.1 carbonic anhydrase -
  D4I31_RS06870 - 1430440..1431498 (-) 1059 WP_139535117.1 DUF874 family protein -
  D4I31_RS06875 asd 1431910..1432950 (-) 1041 WP_139535118.1 aspartate-semialdehyde dehydrogenase -
  D4I31_RS06880 hisS 1432937..1434265 (-) 1329 WP_139535119.1 histidine--tRNA ligase -
  D4I31_RS06885 waaF 1434327..1435376 (+) 1050 WP_139535120.1 lipopolysaccharide heptosyltransferase II Regulator
  D4I31_RS06890 - 1435575..1435793 (-) 219 WP_000744170.1 hypothetical protein -
  D4I31_RS06900 - 1436018..1437007 (+) 990 WP_139535122.1 aldo/keto reductase -
  D4I31_RS06905 fusA 1437522..1439600 (-) 2079 WP_139535123.1 elongation factor G -
  D4I31_RS06910 rpsG 1439612..1440079 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39547.41 Da        Isoelectric Point: 9.9989

>NTDB_id=280927 D4I31_RS06885 WP_139535120.1 1434327..1435376(+) (waaF) [Helicobacter pylori strain 23-A-EK1]
MSVNASKRMRILLRLPNWLGDGVMASSLFYTLKHHYHNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAITTAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEKGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNAKNHLCMKSITPLEVLKATHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=280927 D4I31_RS06885 WP_139535120.1 1434327..1435376(+) (waaF) [Helicobacter pylori strain 23-A-EK1]
ATGAGCGTAAATGCGTCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCATAACGCGCATTTTATCTTAGTGGGTCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTACTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCCGTTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTATTGAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGCAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAAAAGCCACTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.427

97.994

0.367

Multiple sequence alignment