Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C7J89_RS13040 Genome accession   NZ_CP027846
Coordinates   2608515..2609882 (-) Length   455 a.a.
NCBI ID   WP_103294583.1    Uniprot ID   A0A921H0V5
Organism   Staphylococcus kloosii strain ATCC 43959     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2603515..2614882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7J89_RS13025 (C7J89_13015) cysE 2604609..2605238 (-) 630 WP_061855526.1 serine O-acetyltransferase -
  C7J89_RS13030 (C7J89_13020) gltX 2605574..2607028 (-) 1455 WP_048792352.1 glutamate--tRNA ligase -
  C7J89_RS13035 (C7J89_13025) - 2607376..2608440 (-) 1065 WP_061855473.1 PIN/TRAM domain-containing protein -
  C7J89_RS13040 (C7J89_13030) radA 2608515..2609882 (-) 1368 WP_103294583.1 DNA repair protein RadA Machinery gene
  C7J89_RS13045 (C7J89_13035) - 2610370..2612832 (-) 2463 WP_061855475.1 ATP-dependent Clp protease ATP-binding subunit -
  C7J89_RS13050 (C7J89_13040) - 2612845..2613855 (-) 1011 WP_103294584.1 protein arginine kinase -
  C7J89_RS13055 (C7J89_13045) - 2613836..2614402 (-) 567 WP_103294585.1 UvrB/UvrC motif-containing protein -
  C7J89_RS13060 (C7J89_13050) - 2614418..2614879 (-) 462 WP_061855478.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50175.68 Da        Isoelectric Point: 7.7460

>NTDB_id=280899 C7J89_RS13040 WP_103294583.1 2608515..2609882(-) (radA) [Staphylococcus kloosii strain ATCC 43959]
MAKKKVIYECMACGYQSPKWMGKCPNCGAWNQMEESIAQKESSPKHGVRSKATSSKVQKLNEVRHETTPRIKSKSDEFNR
VLGGGVVSGSLVLIGGDPGIGKSTLLLQICAALSQDYNILYITGEESLNQTKLRAERLEEDSSQLNVFAETDLEIIHETV
KQIQPDMIVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIIATASSFKDKAVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAAKLGFKKVIIPETNIGGWTFPDNIKVVGVKSVHEALKHALKN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=280899 C7J89_RS13040 WP_103294583.1 2608515..2609882(-) (radA) [Staphylococcus kloosii strain ATCC 43959]
TTGGCCAAAAAGAAAGTAATATATGAATGTATGGCATGTGGCTATCAATCTCCGAAATGGATGGGAAAATGTCCGAACTG
CGGTGCATGGAATCAAATGGAAGAGAGTATAGCACAGAAAGAAAGCAGTCCGAAGCATGGTGTGCGAAGCAAGGCAACAT
CATCTAAAGTGCAAAAGTTAAATGAGGTTCGCCATGAAACGACACCTAGAATTAAAAGTAAATCAGATGAATTTAATAGA
GTGCTCGGTGGCGGTGTGGTTAGTGGCTCATTAGTATTGATTGGTGGGGACCCAGGTATAGGGAAATCCACTTTATTATT
ACAAATCTGTGCTGCCTTATCTCAAGACTATAATATTTTATACATAACAGGTGAAGAATCTCTAAATCAAACGAAGTTAA
GAGCCGAACGATTAGAGGAGGATTCTAGTCAGTTAAATGTATTTGCAGAAACAGATTTAGAAATTATTCATGAAACGGTA
AAACAAATCCAACCAGATATGATTGTTGTGGACTCGATTCAAACAATATTTCATCCGGAAATCAGTTCTGCGCCGGGTTC
AGTGTCTCAAGTTAGAGAAAGTACCCAAAGTCTTATGAATATTGCTAAACAAATGAATATTGCTACATTTATCGTTGGCC
ATGTGACGAAGGAAGGGCAAATTGCCGGCCCACGTTTACTTGAACATATGGTTGATACGGTATTATATTTTGAAGGCGAT
GAACACCATGCTTATCGTATTTTAAGAGCCGTGAAAAACCGTTTTGGTTCTACGAACGAAATGGGTATTTTTGAAATGAA
ACAGAGCGGGTTGAAAGGTGTCAAAAATCCTTCTGAAATGTTTTTAGAAGAACGTTCGACAAATGTACCCGGTTCTACGA
TTGTATCAACTATGGAAGGGACTAGACCTTTATTGATAGAAGTACAAGCTTTAGTCACTCCAACTACTTTTAACAATCCT
AGACGAATGGCTACAGGTATCGATCATAATCGCTTAAGTTTATTGATGGCTGTATTAGAGAAAAAAGAAAACTATTTATT
ACAGCAACAAGACGCATATATTAAAGTTGCTGGTGGGGTGCGTTTAACAGAGCCTGCAGTTGACCTAGGTATTATAATAG
CTACAGCATCAAGTTTTAAAGATAAAGCTGTAGATGGGTTGGACTGTTTTATAGGCGAGGTTGGACTAACTGGTGAAGTG
CGACGCGTTTCTAGAATAGAACAACGCGTACAAGAAGCGGCTAAACTAGGATTTAAAAAAGTTATTATACCCGAAACGAA
TATCGGTGGTTGGACATTCCCAGATAACATAAAAGTGGTAGGCGTAAAAAGTGTCCACGAAGCTTTAAAACATGCTTTAA
AAAACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

64.254

100

0.644
  radA Streptococcus pneumoniae Rx1

59.603

99.56

0.593
  radA Streptococcus pneumoniae D39

59.603

99.56

0.593
  radA Streptococcus pneumoniae R6

59.603

99.56

0.593
  radA Streptococcus pneumoniae TIGR4

59.603

99.56

0.593
  radA Streptococcus mitis NCTC 12261

59.603

99.56

0.593
  radA Streptococcus mitis SK321

59.603

99.56

0.593

Multiple sequence alignment