Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4I31_RS01315 Genome accession   NZ_CP032908
Coordinates   273533..273991 (-) Length   152 a.a.
NCBI ID   WP_201738147.1    Uniprot ID   -
Organism   Helicobacter pylori strain 23-A-EK1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 268533..278991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I31_RS01300 - 268918..269682 (-) 765 WP_139534089.1 glycosyltransferase family 2 protein -
  D4I31_RS01305 tlpB 269714..271411 (-) 1698 WP_139534090.1 methyl-accepting chemotaxis protein TlpB -
  D4I31_RS01310 - 271618..273363 (-) 1746 WP_139534091.1 5'-nucleotidase C-terminal domain-containing protein -
  D4I31_RS01315 luxS 273533..273991 (-) 459 WP_201738147.1 S-ribosylhomocysteine lyase Regulator
  D4I31_RS01320 - 274026..275168 (-) 1143 WP_139534092.1 cystathionine gamma-synthase -
  D4I31_RS01325 - 275189..276106 (-) 918 WP_201738148.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4I31_RS01330 - 276273..276803 (+) 531 WP_236635756.1 hypothetical protein -
  D4I31_RS01335 dnaK 276937..278799 (-) 1863 WP_201738149.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17310.75 Da        Isoelectric Point: 6.8403

>NTDB_id=280896 D4I31_RS01315 WP_201738147.1 273533..273991(-) (luxS) [Helicobacter pylori strain 23-A-EK1]
MKMNVESFNLDHTKVKAPYVRVADRKKGVNGDVIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYAEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAKNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=280896 D4I31_RS01315 WP_201738147.1 273533..273991(-) (luxS) [Helicobacter pylori strain 23-A-EK1]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACTAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGATCGCAAAAA
GGGCGTTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACATGCCTAGCC
TGCATTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACGCAGAGATTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGTTAAAGGCTAAAGAAGTGCCTGCCAGTAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGTGCCA
AGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

92.763

0.388