Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4I62_RS06790 Genome accession   NZ_CP032907
Coordinates   1420584..1421633 (+) Length   349 a.a.
NCBI ID   WP_139533747.1    Uniprot ID   -
Organism   Helicobacter pylori strain 24-A-EK1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1415584..1426633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I62_RS06775 - 1416162..1417982 (+) 1821 WP_139533746.1 hypothetical protein -
  D4I62_RS06780 asd 1418167..1419207 (-) 1041 WP_139533929.1 aspartate-semialdehyde dehydrogenase -
  D4I62_RS06785 hisS 1419194..1420522 (-) 1329 WP_127939367.1 histidine--tRNA ligase -
  D4I62_RS06790 waaF 1420584..1421633 (+) 1050 WP_139533747.1 lipopolysaccharide heptosyltransferase II Regulator
  D4I62_RS06795 - 1421824..1422162 (-) 339 WP_000744183.1 hypothetical protein -
  D4I62_RS06805 - 1422379..1423368 (+) 990 WP_078248051.1 aldo/keto reductase -
  D4I62_RS06810 fusA 1423899..1425977 (-) 2079 WP_139533748.1 elongation factor G -
  D4I62_RS06815 rpsG 1425989..1426456 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39462.17 Da        Isoelectric Point: 9.4742

>NTDB_id=280882 D4I62_RS06790 WP_139533747.1 1420584..1421633(+) (waaF) [Helicobacter pylori strain 24-A-EK1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLTTHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEKGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSH
NAYNLCGKTSIEELIQHIAVLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=280882 D4I62_RS06790 WP_139533747.1 1420584..1421633(+) (waaF) [Helicobacter pylori strain 24-A-EK1]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGTCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGACTGCTAACCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGACATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCGAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGATTGTTAAAAAACCCCTTATTATCCCAC
AACGCTTACAATCTGTGCGGGAAAACCAGCATTGAAGAATTGATACAACACATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCCATGCATGTGGCTGCTAGTGCGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTAAACCACCATTTAAGCTGTGCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.081

98.567

0.375