Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4I62_RS01300 Genome accession   NZ_CP032907
Coordinates   269867..270334 (-) Length   155 a.a.
NCBI ID   WP_201738038.1    Uniprot ID   -
Organism   Helicobacter pylori strain 24-A-EK1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 264867..275334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I62_RS01285 - 265273..266037 (-) 765 WP_139533072.1 glycosyltransferase family 2 protein -
  D4I62_RS01290 tlpB 266069..267766 (-) 1698 WP_139533073.1 methyl-accepting chemotaxis protein TlpB -
  D4I62_RS01295 - 267973..269718 (-) 1746 WP_139533074.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  D4I62_RS01300 luxS 269867..270334 (-) 468 WP_201738038.1 S-ribosylhomocysteine lyase Regulator
  D4I62_RS01305 - 270372..271514 (-) 1143 WP_139533075.1 cystathionine gamma-synthase -
  D4I62_RS01310 - 271539..272456 (-) 918 WP_201738039.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4I62_RS01315 - 272575..273153 (+) 579 WP_139533077.1 hypothetical protein -
  D4I62_RS01320 dnaK 273395..275257 (-) 1863 WP_139533078.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17640.10 Da        Isoelectric Point: 6.8403

>NTDB_id=280856 D4I62_RS01300 WP_201738038.1 269867..270334(-) (luxS) [Helicobacter pylori strain 24-A-EK1]
MKIPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDVIVKYDVRFKQPNKDHMDMPSLHSLEHLVAETIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEVLEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=280856 D4I62_RS01300 WP_201738038.1 269867..270334(-) (luxS) [Helicobacter pylori strain 24-A-EK1]
ATGAAAATACCAAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAACAACCCAACAAAGATCACATGGACA
TGCCTAGCCTACACTCTTTAGAGCATTTAGTCGCTGAAACTATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGGTTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGGTTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCACAGAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381