Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D4I92_RS03280 Genome accession   NZ_CP032906
Coordinates   646078..647598 (+) Length   506 a.a.
NCBI ID   WP_139519409.1    Uniprot ID   -
Organism   Helicobacter pylori strain 25-A-EK1     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 641078..652598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I92_RS03250 moaC 641233..641709 (+) 477 WP_001131542.1 cyclic pyranopterin monophosphate synthase MoaC -
  D4I92_RS03255 hpaA 641822..642604 (+) 783 WP_139519413.1 flagellar sheath lipoprotein HpaA -
  D4I92_RS03260 - 642632..643468 (+) 837 WP_139519412.1 outer membrane protein -
  D4I92_RS03265 tig 643580..644935 (+) 1356 WP_139519411.1 trigger factor -
  D4I92_RS03270 clpP 644956..645543 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D4I92_RS03275 def 645548..646075 (+) 528 WP_139519410.1 peptide deformylase -
  D4I92_RS03280 comM 646078..647598 (+) 1521 WP_139519409.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D4I92_RS03285 - 647623..649683 (+) 2061 WP_139519408.1 heavy metal translocating P-type ATPase -
  D4I92_RS03290 - 649726..650928 (+) 1203 WP_139535652.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57135.17 Da        Isoelectric Point: 8.5425

>NTDB_id=280815 D4I92_RS03280 WP_139519409.1 646078..647598(+) (comM) [Helicobacter pylori strain 25-A-EK1]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKIIAPKANEELFSLIPNLQCFFVGHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSTFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=280815 D4I92_RS03280 WP_139519409.1 646078..647598(+) (comM) [Helicobacter pylori strain 25-A-EK1]
ATGATTAACACGATATTTTGTGCGACCATGCAAAGGGGAGTGGCGGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAATTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAA
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGGGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGGTTTCAAGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTATTCGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCCACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTATTAGCTTTCAAGCAGCA
AAAGTTAAGGAAACAGAGCACTTTTAATGGTAAGCTTAATGAGGAGCAGATAGAGAGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTGAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

98.814

100

0.988
  comM Acinetobacter baylyi ADP1

36.008

100

0.364