Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4I92_RS01425 Genome accession   NZ_CP032906
Coordinates   266042..267091 (-) Length   349 a.a.
NCBI ID   WP_139519200.1    Uniprot ID   -
Organism   Helicobacter pylori strain 25-A-EK1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 261042..272091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I92_RS01405 rpsG 261455..261922 (+) 468 WP_001254352.1 30S ribosomal protein S7 -
  D4I92_RS01410 fusA 261934..264012 (+) 2079 WP_050840148.1 elongation factor G -
  D4I92_RS01415 - 264533..265523 (-) 991 Protein_268 aldo/keto reductase -
  D4I92_RS01425 waaF 266042..267091 (-) 1050 WP_139519200.1 lipopolysaccharide heptosyltransferase II Regulator
  D4I92_RS01430 hisS 267153..268481 (+) 1329 WP_139519201.1 histidine--tRNA ligase -
  D4I92_RS01435 asd 268468..269508 (+) 1041 WP_139519202.1 aspartate-semialdehyde dehydrogenase -
  D4I92_RS01440 - 269940..271124 (+) 1185 WP_139535610.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39443.26 Da        Isoelectric Point: 9.8268

>NTDB_id=280808 D4I92_RS01425 WP_139519200.1 266042..267091(-) (waaF) [Helicobacter pylori strain 25-A-EK1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDNTKKSLFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAVVSEEILKLIKGLLKNPLLSH
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLQAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=280808 D4I92_RS01425 WP_139519200.1 266042..267091(-) (waaF) [Helicobacter pylori strain 25-A-EK1]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACAACACCAAAAAATCCCTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCGGCTTTTTTGCTTTATGCGACAAA
AACGCCCATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTGTCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCAC
AACGCTTACAATCTGTGCGGGAAAACCAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGTGGCTGCTAGTGCGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTAAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364