Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4J22_RS07295 Genome accession   NZ_CP032905
Coordinates   1470179..1470646 (+) Length   155 a.a.
NCBI ID   WP_201736848.1    Uniprot ID   -
Organism   Helicobacter pylori strain 26-A-EK1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1465179..1475646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4J22_RS07275 dnaK 1465585..1467447 (+) 1863 WP_139547536.1 molecular chaperone DnaK -
  D4J22_RS07280 - 1467619..1467955 (-) 337 Protein_1386 hypothetical protein -
  D4J22_RS07285 - 1468069..1468986 (+) 918 WP_201736847.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4J22_RS07290 - 1469007..1470149 (+) 1143 WP_139547538.1 cystathionine gamma-synthase -
  D4J22_RS07295 luxS 1470179..1470646 (+) 468 WP_201736848.1 S-ribosylhomocysteine lyase Regulator
  D4J22_RS07300 - 1470841..1472541 (+) 1701 WP_341536621.1 5'-nucleotidase C-terminal domain-containing protein -
  D4J22_RS07305 tlpB 1472756..1474453 (+) 1698 WP_139547540.1 methyl-accepting chemotaxis protein TlpB -
  D4J22_RS07310 - 1474485..1475267 (+) 783 WP_139547541.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17682.14 Da        Isoelectric Point: 6.6035

>NTDB_id=280794 D4J22_RS07295 WP_201736848.1 1470179..1470646(+) (luxS) [Helicobacter pylori strain 26-A-EK1]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=280794 D4J22_RS07295 WP_201736848.1 1470179..1470646(+) (luxS) [Helicobacter pylori strain 26-A-EK1]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCCGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGCTTCAAGCAACCCAACCAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAAATTTTAGAGGTTTTAGAAAAGAC
CATGCAAGATGTGCTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCGCAAAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

90.968

0.368