Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C7H73_RS02380 Genome accession   NZ_CP027792
Coordinates   535011..536393 (+) Length   460 a.a.
NCBI ID   WP_106845197.1    Uniprot ID   A0A2P1NHV7
Organism   Pulveribacter suum strain SC2-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 530011..541393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7H73_RS02365 (C7H73_02365) alr 531417..532517 (+) 1101 WP_106845194.1 alanine racemase -
  C7H73_RS02370 (C7H73_02370) - 532535..533371 (+) 837 WP_106845195.1 hypothetical protein -
  C7H73_RS02375 (C7H73_02375) - 533519..534538 (+) 1020 WP_106845196.1 cytochrome-c peroxidase -
  C7H73_RS15640 - 534728..534892 (-) 165 WP_170104807.1 hypothetical protein -
  C7H73_RS02380 (C7H73_02380) radA 535011..536393 (+) 1383 WP_106845197.1 DNA repair protein RadA Machinery gene
  C7H73_RS02385 (C7H73_02385) - 536471..536875 (+) 405 WP_106845198.1 glycerate kinase -
  C7H73_RS02390 (C7H73_02390) - 536940..537878 (+) 939 WP_106845199.1 branched-chain amino acid transaminase -
  C7H73_RS02395 (C7H73_02395) - 537884..538093 (+) 210 WP_106845200.1 zinc-finger domain-containing protein -
  C7H73_RS02400 (C7H73_02400) - 538115..540619 (+) 2505 WP_106845201.1 glycosyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48180.78 Da        Isoelectric Point: 7.4136

>NTDB_id=280786 C7H73_RS02380 WP_106845197.1 535011..536393(+) (radA) [Pulveribacter suum strain SC2-7]
MAKEKTLYTCTECAATSPRWLGKCPGCGAWNTLIETVPEAAGAGKNRLSTPQYAGLAQAQAVAPLSSIEATEVVRTPTGL
EELDRVLGGGMVEGGVVLIGGDPGIGKSTLLLQALDALQRAHLPTLYVTGEESGAQVALRSRRLGLEGSQVNVLAEIQLE
KILATVQATQPAVCVIDSIQTMYSDQLTSAPGSVAQVRECAAHLTRLAKATGIAIVLVGHVTKEGALAGPRVLEHMVDTV
LYFEGDTHSAFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVANPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDG
GGPSPRRLSVGLERDRLAMLLAVLHRHAGIASSDQDVFVNAVGGVRISEPAADLAVLLAITSSLRARALPKGFIAFGEVG
LAGEVRPAPRGQERLKEAAKLGFTVAVVPKANAPKKPIAGLTIHAVERVEEAMQVVRELA

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=280786 C7H73_RS02380 WP_106845197.1 535011..536393(+) (radA) [Pulveribacter suum strain SC2-7]
ATGGCCAAGGAAAAAACCCTCTATACCTGCACCGAGTGCGCCGCCACCAGCCCGCGCTGGCTGGGCAAATGCCCTGGCTG
CGGGGCCTGGAACACGCTGATCGAGACCGTCCCCGAGGCGGCAGGCGCCGGCAAGAACCGGCTGAGCACGCCGCAGTACG
CCGGGCTGGCGCAGGCCCAGGCGGTGGCGCCGCTGTCCAGCATCGAGGCCACCGAGGTGGTGCGCACGCCCACCGGGCTG
GAGGAGCTGGACCGCGTGCTCGGCGGCGGCATGGTCGAGGGCGGCGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAA
GTCCACGCTGCTTCTGCAGGCGCTGGATGCGCTGCAGCGCGCCCACCTGCCCACGCTGTACGTGACGGGCGAGGAAAGCG
GCGCCCAGGTGGCGCTGCGCTCGCGTCGGCTGGGGCTGGAGGGCAGCCAGGTCAACGTGCTGGCCGAGATCCAGCTGGAA
AAAATCCTGGCCACGGTGCAGGCCACGCAGCCGGCGGTGTGCGTGATCGACTCCATCCAGACCATGTACTCCGACCAGCT
GACCAGCGCGCCGGGCTCGGTGGCGCAGGTGCGCGAGTGCGCGGCGCACCTGACGCGCCTGGCCAAGGCCACGGGCATCG
CCATCGTCTTGGTGGGCCACGTGACCAAGGAAGGGGCGCTGGCTGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTG
CTGTATTTCGAGGGCGACACGCACAGCGCCTTTCGCCTGGTGCGGGCCATCAAGAACCGCTTTGGCGCCGTCAACGAGAT
CGGCGTGTTCGCCATGACCGAAAAGGGCCTCAAGGGCGTGGCCAACCCCAGCGCCATCTTCCTGTCGCAGCACAGCGAAC
CCGTGCCCGGCAGCTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAAATCCAGGCGCTGGTGGACGGA
GGCGGGCCCAGCCCGCGCCGGCTGTCCGTGGGCCTGGAGCGCGACCGCCTGGCCATGCTGCTGGCGGTGCTGCATCGCCA
CGCGGGCATTGCCTCGTCCGACCAGGACGTGTTCGTCAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCGGCGGCCGACC
TGGCGGTGCTGCTGGCCATCACCTCGTCCTTGCGGGCGCGCGCACTGCCCAAGGGCTTCATCGCCTTCGGTGAGGTGGGC
CTGGCCGGCGAGGTGCGCCCGGCCCCGCGCGGGCAGGAGCGGCTGAAGGAGGCCGCGAAACTGGGCTTCACCGTGGCCGT
GGTCCCCAAGGCCAATGCGCCCAAGAAGCCCATTGCCGGCCTGACCATCCACGCCGTGGAGCGTGTGGAAGAGGCCATGC
AGGTGGTGCGCGAACTGGCCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P1NHV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

99.348

0.489
  radA Streptococcus mitis NCTC 12261

45.852

99.565

0.457
  radA Streptococcus pneumoniae D39

46.652

97.391

0.454
  radA Streptococcus pneumoniae TIGR4

46.652

97.391

0.454
  radA Streptococcus pneumoniae R6

46.652

97.391

0.454
  radA Streptococcus pneumoniae Rx1

46.652

97.391

0.454
  radA Streptococcus mitis SK321

47.586

94.565

0.45

Multiple sequence alignment