Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   C7H73_RS01445 Genome accession   NZ_CP027792
Coordinates   324604..326163 (+) Length   519 a.a.
NCBI ID   WP_106845028.1    Uniprot ID   A0A2P1NHD3
Organism   Pulveribacter suum strain SC2-7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 319604..331163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7H73_RS01420 (C7H73_01420) argS 319887..321566 (+) 1680 WP_106845023.1 arginine--tRNA ligase -
  C7H73_RS01425 (C7H73_01425) - 321579..322244 (+) 666 WP_106845024.1 SPOR domain-containing protein -
  C7H73_RS01430 (C7H73_01430) - 322345..323004 (+) 660 WP_106845025.1 thiol:disulfide interchange protein DsbA/DsbL -
  C7H73_RS01435 (C7H73_01435) lptA 323114..323746 (+) 633 WP_106845026.1 lipopolysaccharide transport periplasmic protein LptA -
  C7H73_RS01440 (C7H73_01440) lptB 323746..324516 (+) 771 WP_106845027.1 LPS export ABC transporter ATP-binding protein -
  C7H73_RS01445 (C7H73_01445) rpoN/rpoN1 324604..326163 (+) 1560 WP_106845028.1 RNA polymerase factor sigma-54 Machinery gene
  C7H73_RS01455 (C7H73_01455) - 326338..326778 (+) 441 WP_106845029.1 thioesterase family protein -
  C7H73_RS01460 (C7H73_01460) - 326796..328619 (-) 1824 WP_106845030.1 methyl-accepting chemotaxis protein -
  C7H73_RS01465 (C7H73_01465) - 328842..330113 (+) 1272 WP_106845031.1 class I SAM-dependent RNA methyltransferase -
  C7H73_RS01470 (C7H73_01470) - 330103..330567 (+) 465 WP_106847485.1 putative toxin-antitoxin system toxin component, PIN family -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 56344.59 Da        Isoelectric Point: 5.2610

>NTDB_id=280784 C7H73_RS01445 WP_106845028.1 324604..326163(+) (rpoN/rpoN1) [Pulveribacter suum strain SC2-7]
MNRPTLALRVSQQLALTPQLQQSIRLLQLSTLDLAQEVGQMLADNPFLEQAEDGEQDAIDTIAAGADLARATGQNDAQPL
DGAADPGFDAPEPPGLPDTPERLDWEGEANGPDSDWGSSGETPARTGGSGSDTEGDAIDLARSHETLAEHLTHQARLLRL
SPEEAAALALLIGSLSDDGYLEESLPALADSLLGEHWEHDRHEALLHQLTLALGLLQSLEPAGVGARDLAECLTLQLRAQ
LQQAGTGDAPTVQTALAICRQPLDWLARRDVRRLSQACGASEALTRAAIALIGRLEPRPGRRFADVQQFAMVPDVIVRRI
GSGTQQRFSVQLNPAVMPRLQVHEQYAGALRAHRGSGGHPQLQARLQEARWFIKNVQQRFDTILRVSEAIVQRQKSFFVH
GELAMRPLVLRDIAEELGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTETGGNASSTAVRALIRQFIAAESPAKPL
SDSKIAEMLKEQGIECARRTVAKYREAMKIAPTNLRKAL

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=280784 C7H73_RS01445 WP_106845028.1 324604..326163(+) (rpoN/rpoN1) [Pulveribacter suum strain SC2-7]
ATGAATCGCCCCACCCTGGCGCTGCGCGTCTCGCAGCAGCTGGCGCTCACCCCTCAGCTGCAGCAATCGATCCGCCTGCT
GCAGCTGTCCACGCTGGATCTGGCGCAGGAGGTGGGCCAGATGCTGGCCGACAACCCGTTCCTGGAGCAGGCCGAGGACG
GCGAGCAGGATGCTATCGATACAATAGCTGCTGGCGCAGACCTGGCGCGCGCTACAGGCCAAAATGATGCCCAACCGCTG
GACGGCGCCGCCGACCCGGGCTTCGACGCCCCCGAGCCGCCCGGGCTGCCCGACACCCCCGAGCGCCTGGACTGGGAGGG
CGAAGCCAACGGCCCGGACAGCGACTGGGGCAGCAGCGGCGAGACCCCGGCGCGCACCGGCGGCAGCGGCAGCGACACCG
AGGGCGACGCCATCGACCTGGCGCGCAGCCACGAGACGCTGGCCGAGCACCTGACCCACCAGGCGCGGCTGTTGCGCCTG
TCGCCCGAGGAAGCGGCGGCGCTGGCGCTGCTCATCGGCTCGCTCAGCGACGACGGCTACCTGGAGGAATCCCTGCCCGC
CCTGGCCGACAGCCTGCTGGGCGAGCACTGGGAGCACGACCGGCACGAGGCGCTGCTGCACCAGCTGACCCTGGCCCTGG
GGCTGCTGCAAAGCCTGGAGCCCGCCGGCGTGGGCGCGCGCGACCTGGCCGAGTGCCTGACGCTGCAGCTGCGCGCGCAG
CTGCAGCAGGCCGGCACCGGCGATGCGCCCACCGTGCAGACCGCCCTGGCCATCTGCCGCCAGCCGCTGGACTGGCTGGC
CCGGCGCGACGTGCGCCGCCTGTCGCAGGCCTGCGGCGCCAGCGAGGCGCTGACGCGCGCCGCCATCGCCCTCATCGGCC
GGCTGGAGCCGCGCCCGGGGCGCCGCTTTGCCGACGTGCAGCAGTTCGCCATGGTGCCCGACGTGATCGTGCGGCGCATC
GGCAGCGGCACGCAGCAACGCTTTTCCGTGCAGCTCAACCCCGCCGTCATGCCGCGCCTGCAGGTGCACGAGCAGTACGC
CGGCGCGCTGCGCGCCCACCGCGGCAGCGGCGGCCACCCGCAGCTGCAGGCGCGGCTGCAGGAGGCGCGCTGGTTCATCA
AGAACGTGCAGCAGCGCTTTGACACCATCTTGCGCGTGTCCGAAGCCATCGTGCAGCGGCAAAAGAGCTTCTTCGTGCAC
GGCGAGCTGGCCATGCGCCCGCTGGTGCTGCGCGACATCGCCGAAGAACTCGGCCTGCACGAATCGACCATCTCGCGCGT
GACCACCGCCAAGTACATGGCCACGCCCCAGGGCACCTACGAGCTGAAGTACTTCTTCGGCTCCGGCCTGGGCACGGAGA
CCGGCGGCAACGCCTCCAGCACCGCCGTGCGGGCGCTGATCCGCCAGTTCATCGCCGCCGAGAGCCCGGCCAAGCCGCTG
TCGGACAGCAAGATCGCCGAGATGCTCAAGGAGCAGGGCATCGAATGCGCCCGGCGTACCGTGGCCAAGTACCGCGAGGC
GATGAAGATCGCCCCCACCAACCTGCGCAAGGCGCTTTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(362-517)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(6-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(140-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P1NHD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.145

100

0.516

Multiple sequence alignment