Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4J22_RS01760 Genome accession   NZ_CP032905
Coordinates   338368..339417 (-) Length   349 a.a.
NCBI ID   WP_139546912.1    Uniprot ID   -
Organism   Helicobacter pylori strain 26-A-EK1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 333368..344417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4J22_RS01735 rpsG 333643..334110 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  D4J22_RS01740 fusA 334122..336200 (+) 2079 WP_139546910.1 elongation factor G -
  D4J22_RS01745 - 336755..337744 (-) 990 WP_108320119.1 aldo/keto reductase -
  D4J22_RS01755 - 337963..338181 (+) 219 WP_000744170.1 hypothetical protein -
  D4J22_RS01760 waaF 338368..339417 (-) 1050 WP_139546912.1 lipopolysaccharide heptosyltransferase II Regulator
  D4J22_RS01765 hisS 339479..340807 (+) 1329 WP_139546913.1 histidine--tRNA ligase -
  D4J22_RS01770 asd 340794..341834 (+) 1041 WP_139547639.1 aspartate-semialdehyde dehydrogenase -
  D4J22_RS01775 - 342267..343340 (+) 1074 WP_139546914.1 DUF874 family protein -
  D4J22_RS01780 - 343576..344319 (-) 744 WP_121101031.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39389.01 Da        Isoelectric Point: 9.1233

>NTDB_id=280766 D4J22_RS01760 WP_139546912.1 338368..339417(-) (waaF) [Helicobacter pylori strain 26-A-EK1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSATLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSH
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHAAASVQTPLIALFGPTDEKETCPYKAQKAIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLEAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=280766 D4J22_RS01760 WP_139546912.1 338368..339417(-) (waaF) [Helicobacter pylori strain 26-A-EK1]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
ACTCTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTACTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGTCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATTGGCTTTAACCCCAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTACTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCAC
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGCGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTTGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTGCACCTTGTAAAAAGCGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.719

97.994

0.37

Multiple sequence alignment