Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | C7M53_RS19305 | Genome accession | NZ_CP027789 |
| Coordinates | 3634946..3635230 (-) | Length | 94 a.a. |
| NCBI ID | WP_003185421.1 | Uniprot ID | A0A1Y0XQV9 |
| Organism | Bacillus licheniformis strain TAB7 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3589230..3636046 | 3634946..3635230 | within | 0 |
Gene organization within MGE regions
Location: 3589230..3636046
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7M53_RS19015 (C7M53_18990) | - | 3589230..3589820 (+) | 591 | WP_003185308.1 | hypothetical protein | - |
| C7M53_RS19020 (C7M53_18995) | - | 3589922..3590296 (+) | 375 | Protein_3713 | YolD-like family protein | - |
| C7M53_RS19025 (C7M53_19000) | - | 3590704..3591414 (-) | 711 | WP_003185310.1 | DUF421 domain-containing protein | - |
| C7M53_RS19030 (C7M53_19005) | - | 3591622..3592473 (+) | 852 | WP_035334177.1 | ferritin family protein | - |
| C7M53_RS19035 (C7M53_19010) | - | 3592629..3593222 (+) | 594 | WP_003185315.1 | cupin domain-containing protein | - |
| C7M53_RS19040 (C7M53_19015) | - | 3593343..3594296 (-) | 954 | WP_003185317.1 | glycoside hydrolase family 25 protein | - |
| C7M53_RS19045 (C7M53_19020) | - | 3594344..3594607 (-) | 264 | WP_003185319.1 | phage holin | - |
| C7M53_RS19050 (C7M53_19025) | - | 3594623..3594892 (-) | 270 | WP_003185322.1 | hemolysin XhlA family protein | - |
| C7M53_RS19055 (C7M53_19030) | - | 3594955..3595140 (-) | 186 | WP_003185324.1 | XkdX family protein | - |
| C7M53_RS19060 (C7M53_19035) | - | 3595137..3595460 (-) | 324 | WP_003185326.1 | bZIP transcription factor | - |
| C7M53_RS19065 (C7M53_19040) | - | 3595473..3596810 (-) | 1338 | WP_003185328.1 | BppU family phage baseplate upper protein | - |
| C7M53_RS23970 | - | 3596831..3598876 (-) | 2046 | WP_035334112.1 | hypothetical protein | - |
| C7M53_RS19075 (C7M53_19050) | - | 3598913..3600625 (-) | 1713 | WP_003185331.1 | phage tail protein | - |
| C7M53_RS19080 (C7M53_19055) | - | 3600638..3601474 (-) | 837 | WP_003185333.1 | phage tail family protein | - |
| C7M53_RS19085 (C7M53_19060) | - | 3601474..3605946 (-) | 4473 | WP_098408398.1 | phage tail tape measure protein | - |
| C7M53_RS19090 (C7M53_19065) | gpG | 3606155..3606517 (-) | 363 | WP_003185339.1 | phage tail assembly chaperone G | - |
| C7M53_RS19095 (C7M53_19070) | - | 3606571..3607188 (-) | 618 | WP_003185341.1 | major tail protein | - |
| C7M53_RS19100 (C7M53_19075) | - | 3607203..3607586 (-) | 384 | WP_003185344.1 | hypothetical protein | - |
| C7M53_RS19105 (C7M53_19080) | - | 3607583..3607981 (-) | 399 | WP_003185346.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| C7M53_RS19110 (C7M53_19085) | - | 3607981..3608289 (-) | 309 | WP_003185349.1 | phage head closure protein | - |
| C7M53_RS19115 (C7M53_19090) | - | 3608279..3608581 (-) | 303 | WP_003185351.1 | head-tail connector protein | - |
| C7M53_RS19120 (C7M53_19095) | - | 3608602..3609027 (-) | 426 | WP_003185353.1 | collagen-like protein | - |
| C7M53_RS19125 (C7M53_19100) | - | 3609051..3610334 (-) | 1284 | WP_021837713.1 | phage major capsid protein | - |
| C7M53_RS19130 (C7M53_19105) | - | 3610372..3611103 (-) | 732 | WP_021837714.1 | head maturation protease, ClpP-related | - |
| C7M53_RS19135 (C7M53_19110) | - | 3611048..3612358 (-) | 1311 | WP_021837715.1 | phage portal protein | - |
| C7M53_RS19140 (C7M53_19115) | - | 3612359..3612550 (-) | 192 | WP_021837716.1 | DUF1056 family protein | - |
| C7M53_RS19145 (C7M53_19120) | - | 3612562..3614271 (-) | 1710 | WP_003185362.1 | terminase large subunit | - |
| C7M53_RS19150 (C7M53_19125) | - | 3614268..3614783 (-) | 516 | WP_003185364.1 | phage terminase small subunit P27 family | - |
| C7M53_RS19160 (C7M53_19135) | - | 3615013..3615387 (-) | 375 | WP_021837717.1 | HNH endonuclease | - |
| C7M53_RS19165 (C7M53_19140) | - | 3615414..3615722 (-) | 309 | WP_119953961.1 | hypothetical protein | - |
| C7M53_RS19170 (C7M53_19145) | cotD | 3615943..3616167 (-) | 225 | WP_006637235.1 | spore coat protein CotD | - |
| C7M53_RS19175 (C7M53_19150) | - | 3616917..3617297 (-) | 381 | WP_009329244.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| C7M53_RS19180 (C7M53_19155) | - | 3617410..3617808 (-) | 399 | WP_073513083.1 | YopX family protein | - |
| C7M53_RS19185 (C7M53_19160) | - | 3617824..3618339 (-) | 516 | WP_073513081.1 | putative metallopeptidase | - |
| C7M53_RS19190 (C7M53_19165) | - | 3618343..3618513 (-) | 171 | WP_071583658.1 | Fur-regulated basic protein FbpA | - |
| C7M53_RS19195 (C7M53_19170) | - | 3618510..3619049 (-) | 540 | WP_073358634.1 | ERCC4 domain-containing protein | - |
| C7M53_RS19200 (C7M53_19175) | - | 3619046..3619483 (-) | 438 | WP_073358636.1 | hypothetical protein | - |
| C7M53_RS19205 (C7M53_19180) | - | 3619461..3619724 (-) | 264 | WP_016886542.1 | hypothetical protein | - |
| C7M53_RS19210 (C7M53_19185) | - | 3620000..3622432 (-) | 2433 | WP_119953915.1 | phage/plasmid primase, P4 family | - |
| C7M53_RS19215 (C7M53_19190) | - | 3622493..3622930 (-) | 438 | WP_061565940.1 | DUF669 domain-containing protein | - |
| C7M53_RS19220 (C7M53_19195) | - | 3622930..3623862 (-) | 933 | WP_061565941.1 | AAA family ATPase | - |
| C7M53_RS19225 (C7M53_19200) | - | 3623866..3624423 (-) | 558 | WP_061565942.1 | host-nuclease inhibitor Gam family protein | - |
| C7M53_RS19230 (C7M53_19205) | - | 3624516..3624758 (-) | 243 | WP_011198322.1 | hypothetical protein | - |
| C7M53_RS19235 (C7M53_19210) | - | 3624846..3625112 (-) | 267 | WP_061565943.1 | YqaH family protein | - |
| C7M53_RS19240 (C7M53_19215) | - | 3625172..3625552 (+) | 381 | WP_003185396.1 | DUF2513 domain-containing protein | - |
| C7M53_RS23610 (C7M53_0205) | - | 3625544..3625714 (-) | 171 | WP_003185398.1 | hypothetical protein | - |
| C7M53_RS19245 (C7M53_19220) | - | 3626058..3626612 (-) | 555 | WP_003185401.1 | hypothetical protein | - |
| C7M53_RS19250 (C7M53_19225) | - | 3626670..3626858 (-) | 189 | WP_016886536.1 | hypothetical protein | - |
| C7M53_RS19255 (C7M53_19230) | - | 3626990..3627178 (-) | 189 | WP_003185403.1 | helix-turn-helix transcriptional regulator | - |
| C7M53_RS19260 (C7M53_19235) | - | 3627175..3627969 (-) | 795 | WP_011198327.1 | ORF6N domain-containing protein | - |
| C7M53_RS19265 (C7M53_19240) | - | 3627993..3628211 (-) | 219 | WP_021837734.1 | helix-turn-helix domain-containing protein | - |
| C7M53_RS19270 (C7M53_19245) | - | 3628388..3629026 (+) | 639 | WP_003185408.1 | LexA family protein | - |
| C7M53_RS19275 (C7M53_19250) | - | 3629097..3630191 (+) | 1095 | WP_021837735.1 | tyrosine-type recombinase/integrase | - |
| C7M53_RS19285 (C7M53_19260) | smpB | 3630755..3631228 (-) | 474 | WP_009329604.1 | SsrA-binding protein SmpB | - |
| C7M53_RS19290 (C7M53_19265) | rnr | 3631341..3633644 (-) | 2304 | WP_003185414.1 | ribonuclease R | - |
| C7M53_RS19295 (C7M53_19270) | - | 3633658..3634404 (-) | 747 | WP_003185416.1 | alpha/beta hydrolase | - |
| C7M53_RS19300 (C7M53_19275) | secG | 3634545..3634775 (-) | 231 | WP_003185418.1 | preprotein translocase subunit SecG | - |
| C7M53_RS19305 (C7M53_19280) | abrB | 3634946..3635230 (-) | 285 | WP_003185421.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| C7M53_RS19310 (C7M53_19285) | - | 3635259..3635492 (-) | 234 | WP_085959538.1 | helix-turn-helix domain-containing protein | - |
| C7M53_RS19315 (C7M53_19290) | - | 3635645..3636046 (+) | 402 | WP_009329609.1 | transcriptional regulator | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10486.36 Da Isoelectric Point: 7.9620
>NTDB_id=280766 C7M53_RS19305 WP_003185421.1 3634946..3635230(-) (abrB) [Bacillus licheniformis strain TAB7]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEKK
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEKK
Nucleotide
Download Length: 285 bp
>NTDB_id=280766 C7M53_RS19305 WP_003185421.1 3634946..3635230(-) (abrB) [Bacillus licheniformis strain TAB7]
GTGAAAAATACCGGGATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATATACCGACGGCGAAAACATCATTTTGACAAAATACGCCGCAAACATGGCAT
GTTTGATGACCGGCGACATCACCACGAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCGCGCGGAGCGGAA
ATGCTCCTGGAAGATATGATGGCGGCACTGTCAGAAAAGAAATAA
GTGAAAAATACCGGGATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATATACCGACGGCGAAAACATCATTTTGACAAAATACGCCGCAAACATGGCAT
GTTTGATGACCGGCGACATCACCACGAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCGCGCGGAGCGGAA
ATGCTCCTGGAAGATATGATGGCGGCACTGTCAGAAAAGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
56.044 |
96.809 |
0.543 |