Detailed information NTG0280760

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4K04_RS07745
• Genome accession: NZ_CP032904
• Coordinates: 1570810..1572045 (+)
• Length: 411 a.a.
• NCBI ID: WP_139522296.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 169-A-EK5
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1565810..1577045

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4K04_RS07730	-	1566222..1568156 (+)	1935	WP_139522350.1	type IA DNA topoisomerase	-
D4K04_RS07735	-	1568286..1569272 (+)	987	WP_139522294.1	VirB8/TrbF family protein	-
D4K04_RS07740	-	1569272..1570813 (+)	1542	WP_139522295.1	TrbG/VirB9 family P-type conjugative transfer protein	-
D4K04_RS07745	comB10	1570810..1572045 (+)	1236	WP_139522296.1	DNA type IV secretion system protein ComB10	Machinery gene
D4K04_RS07750	-	1572115..1572411 (+)	297	WP_139522297.1	hypothetical protein	-
D4K04_RS07755	-	1572401..1572664 (+)	264	WP_139522298.1	hypothetical protein	-
D4K04_RS07760	-	1572661..1572960 (+)	300	WP_001942121.1	hypothetical protein	-
D4K04_RS07765	-	1572960..1573901 (+)	942	WP_000625142.1	ATPase, T2SS/T4P/T4SS family	-
D4K04_RS07770	-	1573898..1574353 (+)	456	WP_139522299.1	mobilization protein	-
D4K04_RS07775	-	1574350..1574640 (+)	291	WP_078286910.1	hypothetical protein	-
D4K04_RS07780	-	1574641..1575198 (+)	558	WP_139522300.1	hypothetical protein	-
D4K04_RS07785	-	1575199..1576917 (+)	1719	WP_201737391.1	type IV secretory system conjugative DNA transfer family protein	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46531.70 Da
• Isoelectric Point: 10.0578

>NTDB_id=280760 D4K04_RS07745 WP_139522296.1 1570810..1572045(+) (comB10) [Helicobacter pylori strain 169-A-EK5]
MKKLLLLLEHKIIKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPISIKNSVSHIKSK
EKRELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
KAMENKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=280760 D4K04_RS07745 WP_139522296.1 1570810..1572045(+) (comB10) [Helicobacter pylori strain 169-A-EK5]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGTGGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCACTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACACTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAACCTCCCATTTCTATAAAAAATAGCGTTTCTCACATAAAATCCAAA
GAAAAACGAGAACTTGAAAAAGAATACGGCTCTAGCGGGTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTAAGAACGATTACAGCTGACAGGATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGCGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATATCGCTTAGAAATTGCTTGGAACAGGATCATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGTCTGCTCATAGGTCTTACTAGCGGTCTTACC
AAAGCGATGGAAAACAAAAGGGGTGGTTTTAATCAAAACTATTTTGGAGACTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGATCAAATCAGGATTAAGCCCATTATCACTATTAGAGAGG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	46.096	96.594	0.445