Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4K04_RS06695 Genome accession   NZ_CP032904
Coordinates   1379761..1380810 (+) Length   349 a.a.
NCBI ID   WP_139522190.1    Uniprot ID   -
Organism   Helicobacter pylori strain 169-A-EK5     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1374761..1385810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K04_RS06675 - 1374811..1375554 (+) 744 WP_139522186.1 carbonic anhydrase -
  D4K04_RS06680 - 1375790..1376911 (-) 1122 WP_139522187.1 DUF874 family protein -
  D4K04_RS06685 asd 1377344..1378384 (-) 1041 WP_139522188.1 aspartate-semialdehyde dehydrogenase -
  D4K04_RS06690 hisS 1378371..1379699 (-) 1329 WP_139522189.1 histidine--tRNA ligase -
  D4K04_RS06695 waaF 1379761..1380810 (+) 1050 WP_139522190.1 lipopolysaccharide heptosyltransferase II Regulator
  D4K04_RS06700 - 1381000..1381335 (-) 336 WP_139522191.1 flagellar protein -
  D4K04_RS06710 - 1381574..1382563 (+) 990 WP_078289430.1 aldo/keto reductase -
  D4K04_RS06715 fusA 1383122..1385200 (-) 2079 WP_139522192.1 elongation factor G -
  D4K04_RS06720 rpsG 1385212..1385679 (-) 468 WP_139522193.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39510.36 Da        Isoelectric Point: 9.6450

>NTDB_id=280756 D4K04_RS06695 WP_139522190.1 1379761..1380810(+) (waaF) [Helicobacter pylori strain 169-A-EK5]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFVLVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHRL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETCPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKATRTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=280756 D4K04_RS06695 WP_139522190.1 1379761..1380810(+) (waaF) [Helicobacter pylori strain 169-A-EK5]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTGTCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTATTAGCCACTCACAGACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTCTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AATGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTTGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCACTCGCACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361