Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D4K04_RS04775 Genome accession   NZ_CP032904
Coordinates   984936..986456 (-) Length   506 a.a.
NCBI ID   WP_079357231.1    Uniprot ID   -
Organism   Helicobacter pylori strain 169-A-EK5     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 979936..991456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K04_RS04760 hofF 980439..981938 (+) 1500 WP_139521962.1 outer membrane beta-barrel protein HofF -
  D4K04_RS04765 - 982143..982805 (-) 663 WP_139521963.1 restriction endonuclease subunit S -
  D4K04_RS04770 - 982851..984911 (-) 2061 WP_139521964.1 heavy metal translocating P-type ATPase -
  D4K04_RS04775 comM 984936..986456 (-) 1521 WP_079357231.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D4K04_RS04780 def 986462..986986 (-) 525 WP_001185872.1 peptide deformylase -
  D4K04_RS04785 clpP 986991..987578 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D4K04_RS04790 tig 987599..988954 (-) 1356 WP_139521965.1 trigger factor -
  D4K04_RS04795 - 989066..989902 (-) 837 WP_139521966.1 outer membrane protein -
  D4K04_RS04800 hpaA 989931..990713 (-) 783 WP_128050161.1 flagellar sheath lipoprotein HpaA -
  D4K04_RS04805 moaC 990832..991308 (-) 477 WP_139521967.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57261.24 Da        Isoelectric Point: 8.2333

>NTDB_id=280749 D4K04_RS04775 WP_079357231.1 984936..986456(-) (comM) [Helicobacter pylori strain 169-A-EK5]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKHPHAKIIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCSLNFEVQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=280749 D4K04_RS04775 WP_079357231.1 984936..986456(-) (comM) [Helicobacter pylori strain 169-A-EK5]
ATGATCAACACGATATTTTGCGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCCGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAACTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAGA
ATAACGATTTCACTTTCCCGCCTCTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAA
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCTTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCCGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCCTTGAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCACAGCAAGATTGAATACGACAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCCACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTGGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGTGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCTCTTTAAATTTTGAAG
TGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGTTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGTTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.233

100

0.972
  comM Acinetobacter baylyi ADP1

36.399

100

0.368
  comM Legionella pneumophila str. Paris

36.382

99.407

0.362
  comM Legionella pneumophila strain ERS1305867

36.382

99.407

0.362

Multiple sequence alignment