Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   D4K20_RS07305 Genome accession   NZ_CP032903
Coordinates   1493822..1495021 (-) Length   399 a.a.
NCBI ID   WP_139545620.1    Uniprot ID   -
Organism   Helicobacter pylori strain 173-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1488822..1500021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K20_RS07280 - 1488845..1489363 (-) 519 WP_139545615.1 replication regulatory RepB family protein -
  D4K20_RS07285 - 1489360..1490304 (-) 945 WP_139545616.1 CpaF/VirB11 family protein -
  D4K20_RS07290 - 1490309..1490581 (-) 273 WP_201737756.1 hypothetical protein -
  D4K20_RS07295 - 1490599..1491576 (-) 978 WP_139545618.1 hypothetical protein -
  D4K20_RS07300 - 1491589..1493838 (-) 2250 WP_139545619.1 collagen-like protein -
  D4K20_RS07305 comB10 1493822..1495021 (-) 1200 WP_139545620.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4K20_RS07310 - 1495018..1496673 (-) 1656 WP_139545621.1 TrbG/VirB9 family P-type conjugative transfer protein -
  D4K20_RS07315 - 1496670..1497806 (-) 1137 WP_139545622.1 VirB8/TrbF family protein -
  D4K20_RS08545 - 1497799..1497939 (-) 141 WP_000789926.1 hypothetical protein -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 44592.25 Da        Isoelectric Point: 10.0715

>NTDB_id=280706 D4K20_RS07305 WP_139545620.1 1493822..1495021(-) (comB10) [Helicobacter pylori strain 173-A-EK1]
MKQSLLKKISLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKKEENPKTITTSQPTAPTTA
NVSTNPIITDYSYLNSNLNKQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEEEI

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=280706 D4K20_RS07305 WP_139545620.1 1493822..1495021(-) (comB10) [Helicobacter pylori strain 173-A-EK1]
ATGAAACAATCCTTGCTTAAAAAGATAAGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGTCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTTATCTTAACAGCAATCTCAACAAGCAAAATAATACTATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAATTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATACGGCGTGGATAGTTTTACTAATTTA
AAATATAAAGACATCGGCACTAATGAGCATAAGCTATTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGCTCTCAAATCGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTTAACATTGCT
TGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGGTTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATGGTCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(175-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

53.59

97.744

0.524