Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4K20_RS07010 Genome accession   NZ_CP032903
Coordinates   1425927..1426394 (+) Length   155 a.a.
NCBI ID   WP_201737754.1    Uniprot ID   -
Organism   Helicobacter pylori strain 173-A-EK1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1420927..1431394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K20_RS06990 dnaK 1421113..1422975 (+) 1863 WP_058055036.1 molecular chaperone DnaK -
  D4K20_RS06995 - 1423122..1423701 (-) 580 Protein_1333 hypothetical protein -
  D4K20_RS07000 - 1423809..1424726 (+) 918 WP_201737753.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4K20_RS07005 - 1424747..1425889 (+) 1143 WP_139545581.1 cystathionine gamma-synthase -
  D4K20_RS07010 luxS 1425927..1426394 (+) 468 WP_201737754.1 S-ribosylhomocysteine lyase Regulator
  D4K20_RS07015 - 1426545..1428290 (+) 1746 WP_139545582.1 5'-nucleotidase C-terminal domain-containing protein -
  D4K20_RS07020 tlpB 1428494..1430191 (+) 1698 WP_139545583.1 methyl-accepting chemotaxis protein TlpB -
  D4K20_RS07025 - 1430223..1431005 (+) 783 WP_139545584.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17657.04 Da        Isoelectric Point: 6.6035

>NTDB_id=280705 D4K20_RS07010 WP_201737754.1 1425927..1426394(+) (luxS) [Helicobacter pylori strain 173-A-EK1]
MKTSKMNVESFNLDHTKVKAPYVRIADRKKGVNGDVIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHANYVVDWSP
MGCQTGFYLTVLNHDNYTEVLEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=280705 D4K20_RS07010 WP_201737754.1 1425927..1426394(+) (luxS) [Helicobacter pylori strain 173-A-EK1]
ATGAAAACATCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTACGCATCGCCGA
TCGCAAAAAGGGCGTTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACA
TGCCTAGCCTACACTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCCAATTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACAGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGGTTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAACAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCACAGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381

Multiple sequence alignment