Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D4K20_RS03600 Genome accession   NZ_CP032903
Coordinates   719773..721293 (+) Length   506 a.a.
NCBI ID   WP_139545155.1    Uniprot ID   -
Organism   Helicobacter pylori strain 173-A-EK1     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 714773..726293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K20_RS03570 moaC 714921..715397 (+) 477 WP_001131576.1 cyclic pyranopterin monophosphate synthase MoaC -
  D4K20_RS03575 hpaA 715516..716298 (+) 783 WP_139545151.1 flagellar sheath lipoprotein HpaA -
  D4K20_RS03580 - 716327..717163 (+) 837 WP_139545152.1 outer membrane protein -
  D4K20_RS03585 tig 717275..718630 (+) 1356 WP_139545153.1 trigger factor -
  D4K20_RS03590 clpP 718651..719238 (+) 588 WP_000540576.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D4K20_RS03595 def 719243..719767 (+) 525 WP_139545154.1 peptide deformylase -
  D4K20_RS03600 comM 719773..721293 (+) 1521 WP_139545155.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D4K20_RS03605 - 721318..723378 (+) 2061 WP_139545156.1 heavy metal translocating P-type ATPase -
  D4K20_RS03610 - 723419..724648 (+) 1230 WP_139545157.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57104.08 Da        Isoelectric Point: 8.1764

>NTDB_id=280688 D4K20_RS03600 WP_139545155.1 719773..721293(+) (comM) [Helicobacter pylori strain 173-A-EK1]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKCPHAKIIAPKANEELFSLIPNLQCFFVGHFKE
ALEILQNPETKADTHTKKLPFKTIELNDKEYYFSDTYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACEDIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=280688 D4K20_RS03600 WP_139545155.1 719773..721293(+) (comM) [Helicobacter pylori strain 173-A-EK1]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAATTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGTGCCCCCATGCCAAAA
TCATTGCGCCTAAGGCGAATGAGGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTTGGGCATTTTAAAGAA
GCTTTAGAAATCTTACAAAACCCTGAAACCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACACCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTGAGTCTGAATGAAATCTTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGCTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCACAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCAACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAACGCTGAAG
CACAAAAGTTGCTAGAACAAGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAATCTCATATGCTTAAAGCGTTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

98.419

100

0.984
  comM Acinetobacter baylyi ADP1

37.232

100

0.377

Multiple sequence alignment