Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4K20_RS01665 Genome accession   NZ_CP032903
Coordinates   326439..327488 (-) Length   349 a.a.
NCBI ID   WP_139544927.1    Uniprot ID   -
Organism   Helicobacter pylori strain 173-A-EK1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 321439..332488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K20_RS01650 rpsG 321854..322321 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  D4K20_RS01655 fusA 322333..324411 (+) 2079 WP_139544925.1 elongation factor G -
  D4K20_RS01660 - 324931..325920 (-) 990 WP_139544926.1 aldo/keto reductase -
  D4K20_RS08295 - 326138..326305 (+) 168 WP_181346677.1 hypothetical protein -
  D4K20_RS01665 waaF 326439..327488 (-) 1050 WP_139544927.1 lipopolysaccharide heptosyltransferase II Regulator
  D4K20_RS01670 hisS 327550..328878 (+) 1329 WP_139544928.1 histidine--tRNA ligase -
  D4K20_RS01675 asd 328865..329905 (+) 1041 WP_139545742.1 aspartate-semialdehyde dehydrogenase -
  D4K20_RS01680 - 330318..331367 (+) 1050 WP_139544929.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39582.28 Da        Isoelectric Point: 9.6507

>NTDB_id=280681 D4K20_RS01665 WP_139544927.1 326439..327488(-) (waaF) [Helicobacter pylori strain 173-A-EK1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFILVGPQITCELFKKDEKIESVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSTKRWPASYYAEVSAVLLEEGHEIYFFGAKEDTIVSEEILKLIKGSLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLQAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=280681 D4K20_RS01665 WP_139544927.1 326439..327488(-) (waaF) [Helicobacter pylori strain 173-A-EK1]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTATCTTAGTGGGCCCACAAATCACTTGTGAACTTTTCA
AAAAAGATGAAAAAATAGAATCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CACTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCACGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTATCCCAC
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGTGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTGCACCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACCCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.537

97.708

0.367

Multiple sequence alignment