Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HSM_RS01590 Genome accession   NC_010519
Coordinates   332103..332708 (+) Length   201 a.a.
NCBI ID   WP_012341172.1    Uniprot ID   B0UWK7
Organism   Histophilus somni 2336     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 327103..337708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSM_RS01565 (HSM_0305) secF 327661..328629 (+) 969 WP_012341171.1 protein translocase subunit SecF -
  HSM_RS01575 (HSM_0306) secG 329205..329549 (-) 345 WP_011609465.1 preprotein translocase subunit SecG -
  HSM_RS01580 (HSM_0307) - 329687..331585 (-) 1899 WP_011609464.1 DNA topoisomerase III -
  HSM_RS01585 (HSM_0308) - 331711..332040 (+) 330 WP_011609463.1 YbaB/EbfC family nucleoid-associated protein -
  HSM_RS01590 (HSM_0309) recR 332103..332708 (+) 606 WP_012341172.1 recombination mediator RecR Machinery gene
  HSM_RS01595 (HSM_0310) tyrS 332756..333943 (-) 1188 WP_011609461.1 tyrosine--tRNA ligase -
  HSM_RS01600 (HSM_0311) - 334135..336211 (-) 2077 Protein_312 TonB-dependent receptor domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22110.25 Da        Isoelectric Point: 6.3979

>NTDB_id=28067 HSM_RS01590 WP_012341172.1 332103..332708(+) (recR) [Histophilus somni 2336]
MQSSPLLENLIEHLRCLPGVGPKSAQRMAYHLLQRDRSGGMNLAGALTEAMSKIGHCTHCRTFTEEESCAICNNPRRQNS
GFLCVVEQPSDIPAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLQKRLQHESFYEVILATNPTVEGEATANYIAEM
CFQHNIKVSRIAHGIPVGGELETVDGTTLSHSLIGRREIQL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=28067 HSM_RS01590 WP_012341172.1 332103..332708(+) (recR) [Histophilus somni 2336]
ATGCAAAGCAGTCCTCTTTTAGAAAATCTGATTGAACATTTACGCTGTTTACCCGGCGTTGGTCCTAAATCCGCACAGCG
TATGGCATATCATTTATTGCAACGTGATCGTAGCGGTGGTATGAATTTAGCTGGTGCTTTAACCGAAGCGATGTCGAAAA
TTGGTCATTGTACTCATTGCCGCACTTTTACGGAAGAAGAGAGTTGTGCAATTTGTAATAATCCAAGACGACAAAATTCG
GGTTTTCTTTGTGTTGTGGAACAGCCTTCCGATATTCCGGCTATTGAGCAAACAGGGCAATTTTCCGGGCGATATTTTGT
GTTAATGGGACATTTATCTCCTTTAGATGGGATTGGTCCGAAAGAAATCGGTTTGGATTTATTGCAAAAGCGGTTACAAC
ATGAAAGTTTTTATGAAGTTATTTTGGCAACCAATCCAACCGTTGAAGGCGAGGCAACAGCGAATTATATTGCGGAAATG
TGTTTTCAACATAATATAAAGGTCAGCCGTATTGCTCATGGTATCCCTGTAGGAGGGGAATTGGAAACAGTTGACGGCAC
AACTTTAAGTCATTCACTTATTGGGCGTCGTGAAATTCAACTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UWK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

45.729

99.005

0.453
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.719

99.005

0.433

Multiple sequence alignment