Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4K40_RS07100 Genome accession   NZ_CP032902
Coordinates   1435597..1436064 (+) Length   155 a.a.
NCBI ID   WP_201737287.1    Uniprot ID   -
Organism   Helicobacter pylori strain 280-A-EK1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1430597..1441064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K40_RS07080 dnaK 1430702..1432564 (+) 1863 WP_139521101.1 molecular chaperone DnaK -
  D4K40_RS07085 - 1432797..1433326 (-) 530 Protein_1351 hypothetical protein -
  D4K40_RS07090 - 1433487..1434404 (+) 918 WP_201737286.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4K40_RS07095 - 1434425..1435567 (+) 1143 WP_139521103.1 cystathionine gamma-synthase -
  D4K40_RS07100 luxS 1435597..1436064 (+) 468 WP_201737287.1 S-ribosylhomocysteine lyase Regulator
  D4K40_RS07105 - 1436252..1437952 (+) 1701 WP_341539826.1 5'-nucleotidase C-terminal domain-containing protein -
  D4K40_RS07110 tlpB 1438162..1439859 (+) 1698 WP_139521105.1 methyl-accepting chemotaxis protein TlpB -
  D4K40_RS07115 - 1439890..1440654 (+) 765 WP_201737288.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17667.17 Da        Isoelectric Point: 7.1165

>NTDB_id=280666 D4K40_RS07100 WP_201737287.1 1435597..1436064(+) (luxS) [Helicobacter pylori strain 280-A-EK1]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDVIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEVLEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=280666 D4K40_RS07100 WP_201737287.1 1435597..1436064(+) (luxS) [Helicobacter pylori strain 280-A-EK1]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGCATCGCCGA
TCGCAAAAAGGGCGTTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAATAAGGATCACATGGACA
TGCCTAGCCTACACTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGGTTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGGTTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTAAAGAAGTGCCTGCCAGTAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCACAAAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381

Multiple sequence alignment