Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C7K43_RS10390 Genome accession   NZ_CP027786
Coordinates   2170752..2172122 (-) Length   456 a.a.
NCBI ID   WP_124006786.1    Uniprot ID   A0AAN4UDJ1
Organism   Tetragenococcus koreensis strain KCTC 3924     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2165752..2177122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K43_RS10370 (C7K43_10390) - 2165949..2166338 (-) 390 WP_124006782.1 Mini-ribonuclease 3 -
  C7K43_RS10375 (C7K43_10395) cysS 2166335..2167744 (-) 1410 WP_124006783.1 cysteine--tRNA ligase -
  C7K43_RS10380 (C7K43_10400) gltX 2168005..2169462 (-) 1458 WP_222591143.1 glutamate--tRNA ligase -
  C7K43_RS10385 (C7K43_10405) - 2169606..2170727 (-) 1122 WP_124006785.1 PIN/TRAM domain-containing protein -
  C7K43_RS10390 (C7K43_10410) radA 2170752..2172122 (-) 1371 WP_124006786.1 DNA repair protein RadA Machinery gene
  C7K43_RS10395 (C7K43_10415) - 2172136..2172645 (-) 510 WP_124006787.1 dUTP diphosphatase -
  C7K43_RS10400 (C7K43_10420) - 2172837..2173748 (+) 912 WP_186810678.1 aldo/keto reductase -
  C7K43_RS10405 (C7K43_10425) - 2173918..2175006 (-) 1089 WP_124006788.1 hypothetical protein -
  C7K43_RS10410 (C7K43_10430) - 2175049..2176386 (-) 1338 WP_124006789.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50003.39 Da        Isoelectric Point: 6.0432

>NTDB_id=280657 C7K43_RS10390 WP_124006786.1 2170752..2172122(-) (radA) [Tetragenococcus koreensis strain KCTC 3924]
MAKKAKTQFECQNCGYISPRYLGKCPNCGSWNSMVEEKIQDTTDRRTRSTLTGEKMQATLLKDVTPRKEPRVKTSLDELN
RVLGGGVVPGSMILLGGDPGIGKSTLLLQVSQQLAATGGKVLYVSGEESAEQIKMRAQRLGDEDNDFYLFAETDMQDIRD
TIEKLQPDYVIIDSIQTMTQPDISSVAGSVSQVRETTAELLKIAKSNGIAIFVVGHVTKEGSIAGPRMLEHMVDTVLYFE
GDKYQSFRILRAVKNRFGSTNEIGIFEMYEQGLKEVSNPSQVFLEERLEGTSGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTTTGLDFSRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLATAISIASSYKEKGTKPTECFIGEIGLTG
EIRRVSAIEQRVKEVQKLGFERVYLPKNNLSGWQAPAGIEVVGVATLDEALKRVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=280657 C7K43_RS10390 WP_124006786.1 2170752..2172122(-) (radA) [Tetragenococcus koreensis strain KCTC 3924]
ATGGCAAAAAAGGCAAAAACACAATTTGAATGTCAAAATTGCGGGTATATTTCGCCTAGATATTTGGGAAAATGCCCCAA
TTGTGGCAGTTGGAATTCAATGGTAGAAGAAAAAATTCAAGATACTACTGATCGCAGAACAAGATCCACGTTGACTGGAG
AAAAAATGCAAGCGACTCTTTTAAAAGATGTCACGCCTAGAAAGGAACCGCGAGTAAAAACTTCTTTAGATGAGTTAAAT
CGTGTGTTAGGTGGCGGTGTTGTCCCAGGTTCGATGATTCTGTTAGGCGGCGATCCTGGTATTGGTAAATCTACCTTACT
TTTACAGGTGTCACAACAACTGGCAGCAACTGGCGGTAAAGTGCTTTACGTCTCTGGAGAAGAAAGTGCAGAACAAATAA
AAATGCGCGCGCAGCGTTTAGGCGATGAAGATAATGACTTTTATCTATTTGCTGAGACAGATATGCAAGATATTCGTGAT
ACGATCGAAAAATTGCAGCCAGACTATGTGATTATTGATTCTATACAGACTATGACACAGCCAGATATCTCAAGCGTCGC
TGGAAGTGTTAGTCAAGTTCGAGAAACGACGGCTGAATTATTAAAAATTGCTAAGTCAAATGGAATCGCCATTTTCGTGG
TGGGCCATGTGACTAAAGAAGGATCGATTGCTGGTCCTCGCATGCTTGAGCATATGGTCGATACTGTCTTATATTTTGAA
GGGGATAAATATCAATCATTTCGCATTTTACGGGCAGTAAAAAATCGTTTTGGTTCAACGAATGAGATTGGTATTTTTGA
GATGTATGAACAAGGATTAAAAGAAGTTAGTAATCCTTCGCAAGTTTTTTTAGAAGAACGACTGGAAGGGACTAGCGGTT
CAGCTATTGTTGTAGCAATGGAAGGTACTCGTCCTATTTTAGTTGAGATTCAAGCATTAGTTACTCCAACGATGTTTGGT
AATGCTAAACGAACTACGACTGGCCTTGATTTTAGCCGGGTTTCTTTAATTATGGCGGTGTTAGAAAAGCGAGCAGGTTT
ACTTTTACAAAACCAAGATGCTTATCTAAAAGCAGCCGGTGGGGTAAAATTAGATGAACCGGCAATTGATTTAGCCACAG
CTATTAGCATTGCTTCTAGTTATAAAGAAAAAGGAACAAAACCCACGGAGTGCTTTATTGGCGAAATTGGACTAACAGGA
GAGATCCGTCGTGTCAGTGCCATTGAGCAACGTGTAAAAGAAGTACAAAAATTAGGCTTTGAAAGAGTTTATCTACCCAA
AAATAATTTAAGCGGCTGGCAAGCGCCAGCAGGCATCGAAGTTGTGGGTGTAGCGACGCTGGATGAAGCATTAAAACGTG
TATTTCGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(72-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

70.989

99.781

0.708
  radA Streptococcus pneumoniae Rx1

70.989

99.781

0.708
  radA Streptococcus pneumoniae D39

70.989

99.781

0.708
  radA Streptococcus pneumoniae R6

70.989

99.781

0.708
  radA Streptococcus pneumoniae TIGR4

70.989

99.781

0.708
  radA Streptococcus mitis NCTC 12261

70.989

99.781

0.708
  radA Bacillus subtilis subsp. subtilis str. 168

64.302

98.904

0.636

Multiple sequence alignment