Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C7K43_RS06455 Genome accession   NZ_CP027786
Coordinates   1343814..1345631 (-) Length   605 a.a.
NCBI ID   WP_124006120.1    Uniprot ID   -
Organism   Tetragenococcus koreensis strain KCTC 3924     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338814..1350631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K43_RS06430 (C7K43_06440) mgtE 1339179..1340543 (-) 1365 WP_124006115.1 magnesium transporter -
  C7K43_RS06435 (C7K43_06445) - 1340549..1341451 (-) 903 WP_124006116.1 RluA family pseudouridine synthase -
  C7K43_RS06440 (C7K43_06450) - 1341457..1342263 (-) 807 WP_124006117.1 NAD kinase -
  C7K43_RS06445 (C7K43_06455) - 1342256..1342933 (-) 678 WP_124006118.1 GTP pyrophosphokinase -
  C7K43_RS06450 (C7K43_06460) - 1343091..1343666 (+) 576 WP_124006119.1 CYTH domain-containing protein -
  C7K43_RS06455 (C7K43_06465) pepF 1343814..1345631 (-) 1818 WP_124006120.1 oligoendopeptidase F Regulator
  C7K43_RS06460 (C7K43_06470) - 1345725..1346690 (-) 966 WP_124006121.1 competence protein CoiA -
  C7K43_RS06465 (C7K43_06475) - 1346905..1348214 (+) 1310 Protein_1273 ISL3 family transposase -
  C7K43_RS06470 (C7K43_06480) - 1348334..1349044 (-) 711 WP_124006122.1 adaptor protein MecA -
  C7K43_RS06475 (C7K43_06485) spxA 1349199..1349597 (-) 399 WP_124006123.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69629.73 Da        Isoelectric Point: 4.6803

>NTDB_id=280644 C7K43_RS06455 WP_124006120.1 1343814..1345631(-) (pepF) [Tetragenococcus koreensis strain KCTC 3924]
MSEPKKLPERNEVPEKLTWDLTKIFASDQAFEEAFTTLQEKIKQADSYRGTLGEGASAFLAAIEYLLDVSRQLETLYVYS
HLKNDQDTSNTTYQALNSRAGALVTQADEELSFFEPELLSLSDETIWQYFKDEPRLEIYRHFVEQIVANRKHVLPKEQEA
LLAGAGEIFGASSNTFSILNNADLAFPVIEDENGEKVQLSHGVYGQLMESTDRLVRKNAFKGLYSVYKQFGNTLASTLNS
HIKTHNYQAKVRHYDSARAAALSNNHIPESVYDTLVDVVNKNLKLLYRYMGLRKRLLQVDQLHMYDVYTPLLGEAPIRFT
YEQAIDKAFEALTPMGEEYLSVVKKAFDERWIDVVENQGKRSGAYSSGTYDTNPYILLNWHDTLDHVFTLVHEMGHSVHS
YFTQSNQPYVYGDYSIFLAEIASTTNENILTEHLLKTEEDPRVRSYVLNHYLDGFKGTVFRQTQFAEFEHFMHTEDANGT
PLTSEFLNDHYGELNKRYYGDEMEDDPEIHLEWSRIPHFYYNYYVFQYATGFSAASALSQKILTEGPTALDHYLSYLKAG
DSDYPIEVMKKAGVDMTKADYLEDAMHVFEERLNELELLVDELEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=280644 C7K43_RS06455 WP_124006120.1 1343814..1345631(-) (pepF) [Tetragenococcus koreensis strain KCTC 3924]
ATGTCAGAACCCAAAAAATTACCTGAGCGTAATGAAGTACCTGAAAAATTGACTTGGGATTTAACAAAAATCTTTGCAAG
CGACCAAGCGTTTGAAGAGGCATTTACCACACTACAAGAAAAAATAAAACAAGCAGATTCTTATAGAGGAACCCTAGGTG
AGGGAGCGTCAGCATTTTTGGCTGCGATTGAGTATTTATTAGATGTTTCGCGCCAATTAGAAACACTTTATGTTTATAGT
CATTTAAAAAATGATCAAGATACATCAAATACTACTTATCAAGCGCTTAACTCTAGAGCAGGCGCGCTAGTTACCCAAGC
TGACGAAGAATTATCGTTTTTTGAACCTGAATTGCTATCTTTAAGTGACGAAACGATTTGGCAATACTTCAAAGATGAAC
CAAGACTTGAGATTTATCGACACTTTGTCGAACAAATTGTGGCTAATCGAAAACATGTTTTGCCTAAAGAACAAGAGGCA
TTATTAGCAGGCGCGGGAGAAATTTTTGGTGCTTCTAGCAACACATTTTCTATACTGAATAATGCTGATTTAGCTTTTCC
TGTCATTGAAGATGAAAACGGTGAAAAAGTGCAACTTTCTCACGGTGTTTACGGACAATTAATGGAAAGTACGGATCGTT
TAGTTCGCAAAAATGCATTTAAAGGTTTGTATAGTGTGTATAAACAGTTTGGTAATACACTTGCTTCCACACTAAACTCG
CACATCAAAACTCATAATTATCAAGCCAAAGTTCGCCATTATGATTCAGCTAGAGCAGCTGCATTATCAAATAATCATAT
ACCAGAAAGTGTTTATGATACTTTAGTAGATGTTGTTAATAAGAATTTGAAATTACTTTATCGTTACATGGGGCTTAGAA
AACGACTGTTGCAAGTGGATCAATTGCATATGTATGATGTTTACACGCCGCTTTTAGGAGAAGCGCCAATTCGTTTTACC
TATGAACAAGCAATTGACAAAGCATTTGAGGCGTTGACTCCAATGGGCGAAGAATATTTATCTGTGGTAAAAAAAGCTTT
TGATGAACGCTGGATTGATGTTGTGGAAAACCAAGGAAAACGTAGCGGCGCTTATTCATCCGGGACGTATGATACTAACC
CTTATATTTTATTGAATTGGCATGATACGCTAGATCACGTGTTTACCTTGGTGCATGAGATGGGACATAGTGTTCATAGT
TACTTTACCCAAAGCAATCAACCTTATGTGTACGGTGATTATTCTATTTTCTTAGCGGAAATTGCTTCAACTACCAATGA
AAATATTTTGACAGAACATCTTTTAAAAACAGAAGAGGACCCTCGCGTTCGTTCGTATGTATTAAATCATTATCTAGATG
GCTTCAAGGGAACTGTTTTCAGACAAACCCAGTTTGCGGAATTTGAACATTTTATGCACACAGAAGATGCTAATGGAACG
CCATTAACGAGTGAATTTTTGAATGACCATTACGGCGAATTGAACAAACGTTACTATGGCGATGAAATGGAAGATGATCC
AGAAATTCATCTGGAATGGTCACGGATTCCACATTTCTATTATAATTATTATGTATTCCAATATGCCACTGGTTTTTCTG
CTGCTTCTGCGTTATCACAAAAAATATTAACAGAAGGGCCAACCGCCTTGGATCATTACTTGTCTTACTTGAAAGCTGGC
GACAGCGATTACCCAATTGAAGTCATGAAAAAAGCGGGTGTCGATATGACAAAAGCCGATTATTTGGAAGATGCAATGCA
CGTTTTTGAAGAACGACTCAATGAACTAGAATTGTTGGTCGACGAATTAGAAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.649

98.017

0.545

Multiple sequence alignment