Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4K40_RS01800 Genome accession   NZ_CP032902
Coordinates   341425..342474 (-) Length   349 a.a.
NCBI ID   WP_139520439.1    Uniprot ID   -
Organism   Helicobacter pylori strain 280-A-EK1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 336425..347474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K40_RS01775 rpsG 336702..337169 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  D4K40_RS01780 fusA 337181..339259 (+) 2079 WP_139520437.1 elongation factor G -
  D4K40_RS01785 - 339803..340732 (-) 930 WP_341539823.1 aldo/keto reductase -
  D4K40_RS01795 - 341019..341237 (+) 219 WP_000744170.1 hypothetical protein -
  D4K40_RS01800 waaF 341425..342474 (-) 1050 WP_139520439.1 lipopolysaccharide heptosyltransferase II Regulator
  D4K40_RS01805 hisS 342536..343864 (+) 1329 WP_139520440.1 histidine--tRNA ligase -
  D4K40_RS01810 asd 343851..344888 (+) 1038 WP_139520441.1 aspartate-semialdehyde dehydrogenase -
  D4K40_RS01815 - 345303..346337 (+) 1035 WP_139520442.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39444.08 Da        Isoelectric Point: 8.9792

>NTDB_id=280640 D4K40_RS01800 WP_139520439.1 341425..342474(-) (waaF) [Helicobacter pylori strain 280-A-EK1]
MSVNAPKCMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSFFLSHAITTAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPIHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHAAASVQTPLIALFGPTDEKETSPYKAQKAIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLQATHTLLEEP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=280640 D4K40_RS01800 WP_139520439.1 341425..342474(-) (waaF) [Helicobacter pylori strain 280-A-EK1]
ATGAGCGTAAATGCACCCAAATGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACATTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCCCAATTTTTTCGTTCTTTTTTCCTAAGTCATGCGATAACTACTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCTCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTAGCCTTTAACCTCCCCATTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCTTTATTGTTCCAT
AACGCTTACAATTTGTGCGGGAAAACAAGCATTGAAGAATTAATAGAGCGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGCGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTAGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCCATCACGCCCCTTGAAGTCCTTCAAGCCACTCACACCCTTTTAGA
AGAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.719

97.994

0.37