Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C3B72_RS13270 Genome accession   NZ_CP027782
Coordinates   2709546..2710910 (-) Length   454 a.a.
NCBI ID   WP_035111301.1    Uniprot ID   -
Organism   Clostridium tetani strain Mfbjulcb2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2704546..2715910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3B72_RS13250 (C3B72_13195) ispD 2705892..2706599 (-) 708 WP_035111320.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  C3B72_RS13255 (C3B72_13200) - 2706625..2707728 (-) 1104 WP_035111297.1 PIN/TRAM domain-containing protein -
  C3B72_RS13260 (C3B72_13205) - 2708018..2708416 (+) 399 WP_023439627.1 hypothetical protein -
  C3B72_RS13265 (C3B72_13210) disA 2708457..2709530 (-) 1074 WP_023439629.1 DNA integrity scanning diadenylate cyclase DisA -
  C3B72_RS13270 (C3B72_13215) radA 2709546..2710910 (-) 1365 WP_035111301.1 DNA repair protein RadA Machinery gene
  C3B72_RS13275 (C3B72_13220) nagB 2711043..2711768 (-) 726 WP_011100741.1 glucosamine-6-phosphate deaminase -
  C3B72_RS13280 (C3B72_13225) - 2711924..2714359 (-) 2436 WP_011100742.1 ATP-dependent Clp protease ATP-binding subunit -
  C3B72_RS13285 (C3B72_13230) - 2714388..2715410 (-) 1023 WP_011100743.1 protein arginine kinase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50478.64 Da        Isoelectric Point: 7.0222

>NTDB_id=280594 C3B72_RS13270 WP_035111301.1 2709546..2710910(-) (radA) [Clostridium tetani strain Mfbjulcb2]
MAKIKSCFVCQECGYESPKWLGKCPDCNTWNSMVEEIKSKEADKKFNYNLQINSSESIVDIKSITYERISTGINELNRVL
GGGIVRGSLTLISGDPGIGKSTLLLQAANNIAEKYGKILYISGEESQEQIRLRGERLQALCKDVYILAETDINIILANID
KIKPTFIILDSIQTLYNPEISSAPGSVSQVRECSNIIMRLAKTNNIPFFIVAHVTKQGSLAGPKVLEHMVDTVLSFEGER
TEEFRILRTIKNRFGNTSEIGVFEMREDGLNEITNPSEVFLEDINFNKEGSIIIGIMEGSRPILVEVQALATKTNAPMPR
RTVVGVETSRINLILAVLEKKLKIPFYQFDVYINVVGGLNIEGTFADLGIALALISSVKGVEAKLEKMLVVGEIGLTGEV
RPVMFCDRIINEGKKMGFKNFIIPSRNKEKILGNDKSINIIGTQYLKEIINRVF

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=280594 C3B72_RS13270 WP_035111301.1 2709546..2710910(-) (radA) [Clostridium tetani strain Mfbjulcb2]
ATGGCAAAAATAAAAAGTTGTTTTGTATGTCAAGAGTGTGGATATGAATCACCAAAATGGTTGGGGAAGTGTCCAGATTG
TAATACTTGGAATAGCATGGTTGAAGAGATAAAAAGCAAAGAAGCAGATAAAAAATTTAATTACAATCTACAGATAAACT
CATCCGAAAGTATAGTAGATATAAAATCTATTACATATGAGAGAATTAGCACAGGAATTAATGAGCTCAATAGAGTGTTA
GGCGGAGGAATAGTTAGAGGATCATTAACACTTATATCAGGGGATCCTGGTATAGGAAAATCAACTTTATTGTTGCAAGC
TGCAAACAATATAGCAGAAAAGTATGGTAAGATATTATATATTTCAGGGGAAGAATCTCAAGAACAAATAAGATTAAGGG
GAGAAAGATTACAAGCTTTATGTAAAGACGTATATATATTGGCAGAAACAGACATTAATATAATACTAGCCAATATTGAT
AAGATAAAACCTACTTTCATAATATTAGATTCAATTCAGACGTTATACAATCCAGAAATATCTTCAGCACCAGGAAGTGT
GTCACAAGTAAGAGAATGTTCAAATATAATTATGAGATTAGCTAAAACTAACAATATACCATTTTTTATAGTAGCTCATG
TTACCAAACAAGGTTCATTAGCAGGACCTAAGGTTTTGGAACATATGGTAGATACAGTACTATCTTTTGAGGGAGAAAGA
ACAGAGGAATTTAGGATACTTAGAACAATTAAGAATAGATTTGGTAATACTAGTGAAATTGGTGTATTTGAAATGAGAGA
GGATGGACTTAATGAAATAACTAATCCATCAGAGGTATTTTTAGAAGATATAAATTTTAATAAAGAAGGCTCGATAATAA
TAGGAATAATGGAAGGGAGTAGGCCCATATTAGTGGAAGTTCAAGCCTTAGCAACAAAAACAAATGCACCTATGCCGCGA
AGAACAGTAGTAGGAGTAGAAACATCTAGAATAAATTTAATTTTAGCAGTATTAGAAAAGAAATTGAAAATACCCTTTTA
TCAATTTGATGTTTATATAAATGTCGTTGGAGGACTTAACATAGAAGGGACTTTTGCAGATTTGGGAATAGCATTAGCAT
TAATATCTAGTGTAAAAGGTGTTGAAGCTAAATTGGAAAAGATGTTAGTTGTAGGAGAAATAGGATTAACTGGAGAAGTG
AGACCGGTAATGTTTTGTGATAGAATAATAAATGAGGGAAAAAAGATGGGATTTAAAAACTTTATTATTCCTTCAAGAAA
TAAGGAAAAGATTTTAGGAAATGATAAAAGCATAAATATTATAGGAACACAATATTTGAAAGAAATAATAAATAGAGTAT
TTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-218)

Subunit ChlI of Mg-chelatase (ChlI)

(342-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.339

100

0.493
  radA Streptococcus pneumoniae Rx1

48.791

100

0.489
  radA Streptococcus pneumoniae D39

48.791

100

0.489
  radA Streptococcus pneumoniae R6

48.791

100

0.489
  radA Streptococcus pneumoniae TIGR4

48.791

100

0.489
  radA Streptococcus mitis NCTC 12261

48.571

100

0.487
  radA Streptococcus mitis SK321

48.571

100

0.487

Multiple sequence alignment