Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4K94_RS07250 Genome accession   NZ_CP032900
Coordinates   1469277..1469735 (+) Length   152 a.a.
NCBI ID   WP_201737466.1    Uniprot ID   -
Organism   Helicobacter pylori strain 476-A-EK5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1464277..1474735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K94_RS07230 dnaK 1464375..1466237 (+) 1863 WP_139542435.1 molecular chaperone DnaK -
  D4K94_RS07235 - 1466466..1467045 (-) 580 Protein_1390 hypothetical protein -
  D4K94_RS07240 - 1467159..1468076 (+) 918 WP_201737465.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4K94_RS07245 - 1468097..1469239 (+) 1143 WP_139546560.1 cystathionine gamma-synthase -
  D4K94_RS07250 luxS 1469277..1469735 (+) 459 WP_201737466.1 S-ribosylhomocysteine lyase Regulator
  D4K94_RS07255 - 1469900..1471630 (+) 1731 WP_339326796.1 5'-nucleotidase C-terminal domain-containing protein -
  D4K94_RS07265 tlpB 1471836..1473533 (+) 1698 WP_139546562.1 methyl-accepting chemotaxis protein TlpB -
  D4K94_RS07270 - 1473564..1474346 (+) 783 WP_139546563.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17341.82 Da        Isoelectric Point: 6.6035

>NTDB_id=280584 D4K94_RS07250 WP_201737466.1 1469277..1469735(+) (luxS) [Helicobacter pylori strain 476-A-EK5]
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLMVLNHDNYAEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=280584 D4K94_RS07250 WP_201737466.1 1469277..1469735(+) (luxS) [Helicobacter pylori strain 476-A-EK5]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGATCGCAAAAA
GGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACATGCCTAGCC
TACACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTATGTTGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCATGGTGTTAAACCATGACAATTACGCAGAAATTTTAGAGGTTTTAGAAAAGACCATGCAAGA
TGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGCGCGC
AAAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

92.763

0.382