Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4L20_RS06700 Genome accession   NZ_CP032899
Coordinates   1389260..1390303 (+) Length   347 a.a.
NCBI ID   WP_139549932.1    Uniprot ID   -
Organism   Helicobacter pylori strain 478-A-EK1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384260..1395303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L20_RS06680 - 1384303..1385046 (+) 744 WP_139549928.1 carbonic anhydrase -
  D4L20_RS06685 - 1385272..1386411 (-) 1140 WP_139549929.1 DUF874 family protein -
  D4L20_RS06690 asd 1386843..1387883 (-) 1041 WP_139549930.1 aspartate-semialdehyde dehydrogenase -
  D4L20_RS06695 hisS 1387870..1389198 (-) 1329 WP_139549931.1 histidine--tRNA ligase -
  D4L20_RS06700 waaF 1389260..1390303 (+) 1044 WP_139549932.1 lipopolysaccharide heptosyltransferase II Regulator
  D4L20_RS06705 - 1390499..1390801 (-) 303 WP_257535148.1 hypothetical protein -
  D4L20_RS06715 - 1390935..1391924 (+) 990 WP_139549933.1 aldo/keto reductase -
  D4L20_RS06720 fusA 1392457..1394535 (-) 2079 WP_139549934.1 elongation factor G -
  D4L20_RS06725 rpsG 1394547..1395014 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39285.96 Da        Isoelectric Point: 9.4838

>NTDB_id=280553 D4L20_RS06700 WP_139549932.1 1389260..1390303(+) (waaF) [Helicobacter pylori strain 478-A-EK1]
MSVNVPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDNTKKSFFRLLATHKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLQAAHTLLE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=280553 D4L20_RS06700 WP_139549932.1 1389260..1390303(+) (waaF) [Helicobacter pylori strain 478-A-EK1]
ATGAGCGTAAATGTGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAATGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACAACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGTCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGCGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTAAACCACCATTTAAGCTGTGCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTTCAAGCTGCTCACACCCTTTTAGA
ATAG

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.283

99.712

0.372