Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C7M58_RS02035 Genome accession   NZ_CP027779
Coordinates   455870..456823 (-) Length   317 a.a.
NCBI ID   WP_106899112.1    Uniprot ID   -
Organism   Clostridium botulinum strain RF5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450870..461823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M58_RS02010 (C7M58_02025) - 451961..452962 (-) 1002 WP_106899109.1 AraC family transcriptional regulator -
  C7M58_RS02020 (C7M58_02035) - 453164..454108 (-) 945 WP_106899110.1 siderophore ABC transporter substrate-binding protein -
  C7M58_RS02025 (C7M58_02040) - 454178..454933 (-) 756 WP_106899111.1 ATP-binding cassette domain-containing protein -
  C7M58_RS02030 (C7M58_02045) - 454930..455880 (-) 951 WP_030034162.1 iron chelate uptake ABC transporter family permease subunit -
  C7M58_RS02035 (C7M58_02050) ceuB 455870..456823 (-) 954 WP_106899112.1 ABC transporter permease Machinery gene
  C7M58_RS02040 (C7M58_02055) - 457068..457826 (+) 759 WP_106899113.1 AraC family transcriptional regulator -
  C7M58_RS02045 (C7M58_02060) - 457983..459389 (-) 1407 WP_106899114.1 HAMP domain-containing sensor histidine kinase -
  C7M58_RS02050 (C7M58_02065) - 459389..460090 (-) 702 WP_106899115.1 response regulator transcription factor -
  C7M58_RS02055 (C7M58_02070) - 460360..460596 (-) 237 WP_003356614.1 SHOCT domain-containing protein -
  C7M58_RS02060 (C7M58_02075) - 461008..461316 (-) 309 WP_106899116.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34842.13 Da        Isoelectric Point: 10.0770

>NTDB_id=280541 C7M58_RS02035 WP_106899112.1 455870..456823(-) (ceuB) [Clostridium botulinum strain RF5]
MKKRYLILALIILSICSIFIGVKDISFVDIFNSDDVKLKVLLISRIPRLISIIVVGGSMSIAGLIMQQISRNKFVSPDTA
STVDSAKLGILVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYLSLPIVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLYSTALLGAVFLLGCDILGRLIIYPYEISIGLVVGVIGSTVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=280541 C7M58_RS02035 WP_106899112.1 455870..456823(-) (ceuB) [Clostridium botulinum strain RF5]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATCAGCTT
TGTAGATATATTTAATTCAGATGATGTAAAGCTTAAGGTATTATTAATCAGTAGAATTCCAAGACTTATAAGTATTATTG
TAGTAGGAGGGAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGGAATAAATTTGTATCACCAGATACAGCT
TCAACTGTAGATAGTGCAAAACTTGGGATTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTCACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGCACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATAT
TTATACCACTTGTAGGTATAATGCTTGGGAATATAATAGATTCAATAACTACATTTTTTGCATATAAATATAATCTTATT
CAAAGTATTGCATCTTGGCTTCAAGGAGATTTTTCTTTAATTATTAAAGGAAATTATGAGCTTATATATCTGAGTCTACC
TATTGTAGTCATAGCTTTTATTTATGCCAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCTAAGAATTTAGGGG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTGGTAGTTATTACTGTAGGAAAA
ATACCATTTTTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGAGATAATTTAAAAAATAGTCTTTATAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATACTAGGTAGATTAATTATTTATCCTTATGAAATATCTATAG
GACTTGTAGTTGGGGTTATAGGAAGTACAGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment